Protein : Qrob_P0685640.2 Q. robur
Protein Identifier  ? Qrob_P0685640.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11562:SF31 - RE54080P (PTHR11562:SF31) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 435  
Kegg Orthology  K14689
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008324 cation transmembrane transporter activity Enables the transfer of cation from one side of the membrane to the other.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015597 1 434 + 434 Gaps:18 100.00 416 82.21 0.0 Zinc transporter of isoform 1
blastp_kegg lcl|vvi:100241107 1 434 + 434 Gaps:18 100.00 418 78.95 0.0 metal tolerance protein A2-like
blastp_kegg lcl|sly:101249377 1 434 + 434 Gaps:38 100.00 416 80.53 0.0 metal tolerance protein 1-like
blastp_kegg lcl|cit:102623636 1 434 + 434 Gaps:41 96.80 406 81.93 0.0 metal tolerance protein 1-like
blastp_kegg lcl|cic:CICLE_v10020411mg 1 434 + 434 Gaps:41 96.80 406 81.68 0.0 hypothetical protein
blastp_kegg lcl|csv:101215080 1 434 + 434 Gaps:21 98.34 422 80.72 0.0 metal tolerance protein A2-like
blastp_kegg lcl|csv:101213602 1 434 + 434 Gaps:21 98.34 422 80.72 0.0 metal tolerance protein A2-like
blastp_kegg lcl|csv:101226660 1 434 + 434 Gaps:21 100.00 415 80.72 0.0 metal tolerance protein A2-like
blastp_kegg lcl|pop:POPTR_0001s45520g 1 433 + 433 Gaps:16 99.78 448 72.93 0.0 hypothetical protein
blastp_kegg lcl|cmo:103498976 1 434 + 434 Gaps:23 98.33 420 80.63 0.0 metal tolerance protein 1-like
blastp_uniprot_sprot sp|Q688R1|MTP1_ORYSJ 1 434 + 434 Gaps:28 100.00 418 70.33 3e-175 Metal tolerance protein 1 OS Oryza sativa subsp. japonica GN MTP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZT63|MTP1_ARATH 258 433 + 176 Gaps:6 42.71 398 82.35 4e-87 Metal tolerance protein 1 OS Arabidopsis thaliana GN MTP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LXS1|MTPA2_ARATH 245 434 + 190 Gaps:24 42.24 393 80.72 2e-82 Metal tolerance protein A2 OS Arabidopsis thaliana GN MTPA2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M271|MTPA1_ARATH 28 433 + 406 Gaps:4 92.51 334 72.82 2e-74 Metal tolerance protein A1 OS Arabidopsis thaliana GN MTPA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DBM8|MTPB_ARATH 36 186 + 151 none 40.27 375 49.67 7e-41 Metal tolerance protein B OS Arabidopsis thaliana GN MTPB PE 2 SV 1
blastp_uniprot_sprot sp|Q5I020|ZNT8_XENLA 31 432 + 402 Gaps:17 87.73 375 41.64 8e-39 Zinc transporter 8 OS Xenopus laevis GN slc30a8 PE 2 SV 1
blastp_uniprot_sprot sp|Q54QU8|Y3629_DICDI 46 433 + 388 none 51.93 543 49.29 2e-38 Probable zinc transporter protein DDB_G0283629 OS Dictyostelium discoideum GN DDB_G0283629 PE 3 SV 1
blastp_uniprot_sprot sp|Q5XHB4|ZNT8_XENTR 36 432 + 397 Gaps:5 83.42 374 41.99 3e-36 Zinc transporter 8 OS Xenopus tropicalis GN slc30a8 PE 2 SV 1
blastp_uniprot_sprot sp|Q2HJ10|ZNT2_MOUSE 49 433 + 385 Gaps:1 78.71 371 45.55 1e-35 Zinc transporter 2 OS Mus musculus GN Slc30a2 PE 2 SV 1
blastp_uniprot_sprot sp|Q62941|ZNT2_RAT 49 432 + 384 none 78.55 359 45.39 5e-35 Zinc transporter 2 OS Rattus norvegicus GN Slc30a2 PE 2 SV 1
rpsblast_cdd gnl|CDD|211639 67 432 + 366 Gaps:7 99.25 268 40.23 3e-34 TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters a number of which have been shown to transport divalent cations of cobalt cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts often containing low-complexity sequence.
rpsblast_cdd gnl|CDD|31423 41 434 + 394 Gaps:7 97.30 296 36.81 2e-27 COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|179593 50 434 + 385 Gaps:6 88.78 312 37.18 3e-21 PRK03557 PRK03557 zinc transporter ZitB Provisional.
rpsblast_cdd gnl|CDD|201849 67 432 + 366 Gaps:7 97.80 273 26.22 2e-20 pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium zinc and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.
rpsblast_cdd gnl|CDD|30402 49 432 + 384 Gaps:7 87.17 304 25.28 2e-13 COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36695 1 434 + 434 Gaps:91 90.50 379 53.06 1e-112 KOG1482 KOG1482 KOG1482 Zn2+ transporter [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36696 56 432 + 377 Gaps:31 89.11 404 29.72 4e-43 KOG1483 KOG1483 KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36697 56 433 + 378 Gaps:70 88.14 354 32.37 3e-35 KOG1484 KOG1484 KOG1484 Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 27 433 407 PTHR11562 none none IPR002524
PANTHER 27 433 407 PTHR11562:SF31 none none none
Pfam 58 432 375 PF01545 none Cation efflux family IPR002524
Phobius 326 347 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 287 355 69 G3DSA:1.20.1510.10 none none IPR027469
Gene3D 56 184 129 G3DSA:1.20.1510.10 none none IPR027469
SUPERFAMILY 361 432 72 SSF160240 none none none
Phobius 109 119 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 297 320 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 55 434 380 TIGR01297 none CDF: cation diffusion facilitator family transporter IPR002524
SUPERFAMILY 287 356 70 SSF161111 none none none
SUPERFAMILY 52 184 133 SSF161111 none none none
Phobius 89 108 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 159 180 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 181 296 116 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 57 57 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 148 158 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 348 434 87 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 120 147 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 321 325 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 78 88 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 58 77 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

6 Localization

Analysis Start End Length
TMHMM 58 77 19
TMHMM 159 181 22
TMHMM 324 341 17
TMHMM 88 110 22
TMHMM 297 319 22
TMHMM 122 144 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting