Protein : Qrob_P0685030.2 Q. robur
Protein Identifier  ? Qrob_P0685030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1185//KOG1223//KOG4166 - Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism Coenzyme transport and metabolism]. // Isochorismate synthase [Amino acid transport and metabolism]. // Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism Coenzyme transport and metabolism]. Code Enzyme  EC:2.2.1.9, EC:4.2.99.20, EC:4.2.1.113
Gene Prediction Quality  validated Protein length 

Sequence

Length: 335  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0030976 thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
GO:0009234 menaquinone biosynthetic process The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2.
GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity Catalysis of the reaction: 2-oxoglutarate + H(+) + isochorismate = 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate + CO(2).

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa016512mg 1 316 + 316 Gaps:1 19.20 1651 81.39 1e-176 hypothetical protein
blastp_kegg lcl|cic:CICLE_v100304922m 1 316 + 316 Gaps:2 39.95 796 78.30 1e-176 hypothetical protein
blastp_kegg lcl|pmum:103342087 1 316 + 316 Gaps:1 18.72 1693 81.07 2e-175 protein PHYLLO chloroplastic
blastp_kegg lcl|cit:102608540 1 316 + 316 Gaps:2 18.18 1749 78.30 5e-169 protein PHYLLO chloroplastic-like
blastp_kegg lcl|fve:101297638 1 316 + 316 Gaps:1 19.05 1664 77.29 5e-168 protein PHYLLO chloroplastic-like
blastp_kegg lcl|vvi:100241089 3 316 + 314 Gaps:1 19.52 1614 78.41 8e-168 protein PHYLLO chloroplastic-like
blastp_kegg lcl|pxb:103946661 1 316 + 316 Gaps:1 18.49 1714 77.92 3e-167 protein PHYLLO chloroplastic
blastp_kegg lcl|rcu:RCOM_1465190 3 316 + 314 Gaps:2 18.82 1679 77.53 6e-164 menaquinone biosynthesis protein putative (EC:3.1.1.1)
blastp_kegg lcl|gmx:100798570 4 316 + 313 Gaps:1 18.56 1692 75.48 4e-163 protein PHYLLO chloroplastic-like
blastp_kegg lcl|cmo:103489211 3 316 + 314 Gaps:1 18.18 1733 76.51 1e-162 protein PHYLLO chloroplastic
blastp_pdb 2x7j_D 13 315 + 303 Gaps:30 47.19 604 39.65 3e-48 mol:protein length:604 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2x7j_C 13 315 + 303 Gaps:30 47.19 604 39.65 3e-48 mol:protein length:604 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2x7j_B 13 315 + 303 Gaps:30 47.19 604 39.65 3e-48 mol:protein length:604 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2x7j_A 13 315 + 303 Gaps:30 47.19 604 39.65 3e-48 mol:protein length:604 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jla_D 12 307 + 296 Gaps:23 52.15 558 40.55 1e-47 mol:protein length:558 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jla_C 12 307 + 296 Gaps:23 52.15 558 40.55 1e-47 mol:protein length:558 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jla_B 12 307 + 296 Gaps:23 52.15 558 40.55 1e-47 mol:protein length:558 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jla_A 12 307 + 296 Gaps:23 52.15 558 40.55 1e-47 mol:protein length:558 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jlc_B 12 307 + 296 Gaps:23 50.43 577 40.55 1e-47 mol:protein length:577 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_pdb 2jlc_A 12 307 + 296 Gaps:23 50.43 577 40.55 1e-47 mol:protein length:577 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEX
blastp_uniprot_sprot sp|Q15KI9|PHYLO_ARATH 6 316 + 311 none 18.13 1715 69.13 2e-147 Protein PHYLLO chloroplastic OS Arabidopsis thaliana GN PHYLLO PE 2 SV 2
blastp_uniprot_sprot sp|Q2S2V6|MEND_SALRD 1 275 + 275 Gaps:10 45.85 591 44.28 8e-63 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Salinibacter ruber (strain DSM 13855 / M31) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|B4S4J4|MEND_PROA2 11 314 + 304 Gaps:16 49.83 578 43.40 2e-61 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|A1BI74|MEND_CHLPD 10 275 + 266 Gaps:6 44.63 587 42.75 2e-59 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Chlorobium phaeobacteroides (strain DSM 266) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|B4SET5|MEND_PELPB 10 277 + 268 Gaps:4 44.52 593 43.94 1e-58 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|B3EG68|MEND_CHLL2 11 289 + 279 Gaps:8 46.83 583 43.59 2e-58 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Chlorobium limicola (strain DSM 245 / NBRC 103803) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|A4SD60|MEND_PROVI 10 320 + 311 Gaps:26 54.72 583 38.87 1e-57 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Prosthecochloris vibrioformis (strain DSM 265) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|B3QL00|MEND_CHLP8 11 276 + 266 Gaps:4 44.94 583 42.37 1e-57 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Chlorobaculum parvum (strain NCIB 8327) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|Q1AS21|MEND_RUBXD 12 276 + 265 Gaps:11 44.60 574 46.48 3e-57 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN menD PE 3 SV 1
blastp_uniprot_sprot sp|Q3B612|MEND_PELLD 12 276 + 265 Gaps:4 44.77 583 40.61 3e-57 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS Pelodictyon luteolum (strain DSM 273) GN menD PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 316 311 PTHR18968:SF114 none none none
TIGRFAM 15 316 302 TIGR00173 "KEGG:00130+2.2.1.9","MetaCyc:PWY-5791","MetaCyc:PWY-5837","UniPathway:UPA00079","UniPathway:UPA01057" menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase IPR004433
PANTHER 6 316 311 PTHR18968 none none none
Pfam 16 183 168 PF02776 none Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IPR012001
SUPERFAMILY 9 188 180 SSF52518 none none IPR029061
Gene3D 12 185 174 G3DSA:3.40.50.970 none none IPR029061

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting