Protein : Qrob_P0683500.2 Q. robur
Protein Identifier  ? Qrob_P0683500.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12948 - signal peptidase complex subunit 3 [EC:3.4.-.-] Code Enzyme  EC:3.4.21.89
Gene Prediction Quality  validated Protein length 

Sequence

Length: 168  
Kegg Orthology  K12948
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0008233 peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO:0005787 signal peptidase complex A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space.
GO:0006465 signal peptide processing The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344667 1 167 + 167 none 100.00 167 91.62 7e-114 signal peptidase complex subunit 3B-like
blastp_kegg lcl|pper:PRUPE_ppa012492mg 1 167 + 167 none 100.00 167 91.02 7e-113 hypothetical protein
blastp_kegg lcl|pxb:103941502 1 167 + 167 none 100.00 167 89.22 1e-111 signal peptidase complex subunit 3B
blastp_kegg lcl|pxb:103962921 1 167 + 167 none 100.00 167 89.22 1e-111 signal peptidase complex subunit 3B-like
blastp_kegg lcl|gmx:100499788 1 167 + 167 none 100.00 167 89.22 1e-110 uncharacterized LOC100499788
blastp_kegg lcl|vvi:100252902 1 167 + 167 none 100.00 167 86.23 7e-109 signal peptidase complex subunit 3B-like
blastp_kegg lcl|gmx:100306631 1 167 + 167 none 100.00 167 88.02 1e-108 uncharacterized LOC100306631
blastp_kegg lcl|mdm:103430480 1 167 + 167 none 100.00 167 87.43 5e-108 signal peptidase complex subunit 3B-like
blastp_kegg lcl|pvu:PHAVU_006G093500g 1 167 + 167 none 100.00 167 87.43 5e-108 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1431020 1 167 + 167 none 100.00 167 85.03 8e-108 microsomal signal peptidase 23 kD subunit putative
blastp_uniprot_sprot sp|Q53YF3|SPC3B_ARATH 1 167 + 167 none 100.00 167 80.84 5e-102 Signal peptidase complex subunit 3B OS Arabidopsis thaliana GN At5g27430 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MA96|SPC3A_ARATH 1 167 + 167 none 100.00 167 76.65 2e-95 Signal peptidase complex subunit 3A OS Arabidopsis thaliana GN At3g05230 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LGB4|SPCS3_ORYSJ 1 166 + 166 Gaps:21 98.64 147 49.66 3e-33 Probable signal peptidase complex subunit 3 OS Oryza sativa subsp. japonica GN Os01g0131800 PE 3 SV 2
blastp_uniprot_sprot sp|P28687|SPCS3_CHICK 1 148 + 148 Gaps:7 86.11 180 36.77 6e-25 Signal peptidase complex subunit 3 OS Gallus gallus GN SPC22 PE 1 SV 1
blastp_uniprot_sprot sp|P61009|SPCS3_HUMAN 1 148 + 148 Gaps:7 86.11 180 34.19 2e-22 Signal peptidase complex subunit 3 OS Homo sapiens GN SPCS3 PE 1 SV 1
blastp_uniprot_sprot sp|P61008|SPCS3_CANFA 1 148 + 148 Gaps:7 86.11 180 34.19 2e-22 Signal peptidase complex subunit 3 OS Canis familiaris GN SPCS3 PE 1 SV 1
blastp_uniprot_sprot sp|Q3SZU5|SPCS3_BOVIN 1 148 + 148 Gaps:7 86.11 180 34.19 2e-22 Signal peptidase complex subunit 3 OS Bos taurus GN SPCS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D365|SPCS3_MOUSE 1 148 + 148 Gaps:7 86.11 180 35.48 6e-22 Signal peptidase complex subunit 3 OS Mus musculus GN Spcs3 PE 2 SV 1
blastp_uniprot_sprot sp|Q568Z4|SPCS3_RAT 1 148 + 148 Gaps:7 86.11 180 34.84 1e-21 Signal peptidase complex subunit 3 OS Rattus norvegicus GN Spcs3 PE 2 SV 1
blastp_uniprot_sprot sp|P34525|SPCS3_CAEEL 1 159 + 159 Gaps:12 90.56 180 34.97 1e-20 Probable signal peptidase complex subunit 3 OS Caenorhabditis elegans GN K12H4.4 PE 1 SV 1
rpsblast_cdd gnl|CDD|191032 1 167 + 167 Gaps:8 100.00 175 43.43 3e-54 pfam04573 SPC22 Signal peptidase subunit. Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC) which consists of four subunits in yeast and five in mammals. This family is common to yeast and mammals.
rpsblast_cdd gnl|CDD|173408 38 166 + 129 Gaps:4 70.81 185 32.06 2e-12 PTZ00116 PTZ00116 signal peptidase Provisional.
rpsblast_kog gnl|CDD|38582 1 167 + 167 Gaps:8 99.43 176 41.71 1e-51 KOG3372 KOG3372 KOG3372 Signal peptidase complex subunit [Intracellular trafficking secretion and vesicular transport].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
PIRSF 1 167 167 PIRSF016089 none none IPR007653
Phobius 27 167 141 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 1 166 166 PF04573 none Signal peptidase subunit IPR007653
Phobius 22 26 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 2 167 166 PTHR12804 none none IPR007653

4 Localization

Analysis Start End Length
SignalP_EUK 1 26 25
TMHMM 7 29 22
SignalP_GRAM_NEGATIVE 1 26 25
SignalP_GRAM_POSITIVE 1 26 25

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting