Protein : Qrob_P0682780.2 Q. robur
Protein Identifier  ? Qrob_P0682780.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=1) K03217 - preprotein translocase subunit YidC Gene Prediction Quality  validated
Protein length 

Sequence

Length: 555  
Kegg Orthology  K03217
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0051205 protein insertion into membrane The process that results in the incorporation of a protein into a biological membrane. Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321883 3 549 + 547 Gaps:42 93.47 551 72.82 0.0 ALBINO3-like protein 1 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa003754mg 3 549 + 547 Gaps:42 93.47 551 72.43 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_010677 9 520 + 512 Gaps:40 89.35 535 74.69 0.0 OxaA/YidC-like membrane insertion protein isoform 1
blastp_kegg lcl|mdm:103425510 3 545 + 543 Gaps:39 97.15 527 71.48 0.0 ALBINO3-like protein 1 chloroplastic
blastp_kegg lcl|mdm:103403095 3 545 + 543 Gaps:39 97.15 527 71.48 0.0 ALBINO3-like protein 1 chloroplastic
blastp_kegg lcl|pxb:103949856 6 545 + 540 Gaps:42 96.21 528 72.44 0.0 ALBINO3-like protein 1 chloroplastic
blastp_kegg lcl|cit:102630966 1 552 + 552 Gaps:50 94.80 538 70.78 0.0 ALBINO3-like protein 1 chloroplastic-like
blastp_kegg lcl|mdm:103430670 6 545 + 540 Gaps:41 92.69 547 70.81 0.0 ALBINO3-like protein 1 chloroplastic
blastp_kegg lcl|cic:CICLE_v10031171mg 1 552 + 552 Gaps:50 94.27 541 70.59 0.0 hypothetical protein
blastp_kegg lcl|vvi:100256113 9 552 + 544 Gaps:46 92.39 539 70.68 0.0 ALBINO3-like protein 1 chloroplastic
blastp_uniprot_sprot sp|Q9FYL3|ALB31_ARATH 1 531 + 531 Gaps:82 97.60 499 65.50 0.0 ALBINO3-like protein 1 chloroplastic OS Arabidopsis thaliana GN ALB3L1 PE 2 SV 3
blastp_uniprot_sprot sp|Q8LBP4|ALB3_ARATH 69 353 + 285 Gaps:6 62.12 462 69.34 8e-143 Inner membrane protein ALBINO3 chloroplastic OS Arabidopsis thaliana GN ALB3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FY06|PPF1_PEA 69 377 + 309 Gaps:4 69.91 442 66.34 1e-136 Inner membrane protein PPF-1 chloroplastic OS Pisum sativum GN PPF-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LKI3|ALB32_CHLRE 108 347 + 240 Gaps:7 55.21 422 65.24 6e-102 Inner membrane ALBINO3-like protein 2 chloroplastic OS Chlamydomonas reinhardtii GN ALB3.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S339|ALB31_CHLRE 99 361 + 263 Gaps:6 53.94 495 51.69 3e-88 Inner membrane ALBINO3-like protein 1 chloroplastic OS Chlamydomonas reinhardtii GN ALB3.1 PE 3 SV 1
blastp_uniprot_sprot sp|P60037|YIDC_WOLSU 131 348 + 218 Gaps:45 33.77 536 38.67 4e-32 Membrane protein insertase YidC OS Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN yidC PE 3 SV 1
blastp_uniprot_sprot sp|A0LLH3|YIDC_SYNFM 130 348 + 219 Gaps:28 34.90 553 39.38 8e-32 Membrane protein insertase YidC OS Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN yidC PE 3 SV 1
blastp_uniprot_sprot sp|Q04XE2|YIDC_LEPBL 69 346 + 278 Gaps:34 41.48 622 35.27 7e-31 Membrane protein insertase YidC OS Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN yidC PE 3 SV 1
blastp_uniprot_sprot sp|Q04W30|YIDC_LEPBJ 69 346 + 278 Gaps:34 41.48 622 35.27 7e-31 Membrane protein insertase YidC OS Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN yidC PE 3 SV 1
blastp_uniprot_sprot sp|Q9RNL5|YIDC_ZYMMO 131 348 + 218 Gaps:19 34.37 579 38.19 2e-30 Membrane protein insertase YidC OS Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN yidC PE 3 SV 2
rpsblast_cdd gnl|CDD|202110 131 348 + 218 Gaps:31 97.93 193 41.27 3e-56 pfam02096 60KD_IMP 60Kd inner membrane protein.
rpsblast_cdd gnl|CDD|211846 131 347 + 217 Gaps:37 99.45 181 40.00 2e-54 TIGR03592 yidC_oxa1_cterm membrane protein insertase YidC/Oxa1 family C-terminal domain. This model describes full-length from some species and the C-terminal region only from other species of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
rpsblast_cdd gnl|CDD|179279 131 346 + 216 Gaps:35 35.12 521 41.53 1e-44 PRK01318 PRK01318 membrane protein insertase Provisional.
rpsblast_cdd gnl|CDD|31050 128 346 + 219 Gaps:33 59.87 314 36.70 3e-37 COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion].
rpsblast_cdd gnl|CDD|178899 105 354 + 250 Gaps:38 96.86 223 33.80 4e-36 PRK00145 PRK00145 putative inner membrane protein translocase component YidC Provisional.
rpsblast_cdd gnl|CDD|179310 131 349 + 219 Gaps:47 75.00 256 29.17 1e-27 PRK01622 PRK01622 OxaA-like protein precursor Validated.
rpsblast_cdd gnl|CDD|179278 131 403 + 273 Gaps:42 82.37 329 26.57 2e-27 PRK01315 PRK01315 putative inner membrane protein translocase component YidC Provisional.
rpsblast_cdd gnl|CDD|179508 131 353 + 223 Gaps:48 77.25 255 31.98 2e-26 PRK02944 PRK02944 OxaA-like protein precursor Validated.
rpsblast_cdd gnl|CDD|179202 131 379 + 249 Gaps:36 27.55 795 30.14 3e-25 PRK01001 PRK01001 putative inner membrane protein translocase component YidC Provisional.
rpsblast_cdd gnl|CDD|179580 131 346 + 216 Gaps:24 77.63 304 24.15 3e-23 PRK03449 PRK03449 putative inner membrane protein translocase component YidC Provisional.

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 130 151 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 292 311 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 427 477 51 Coil none none none
PANTHER 69 241 173 PTHR12428 none none IPR001708
Phobius 334 554 221 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 152 188 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 398 404 7 PTHR12428 none none IPR001708
PANTHER 272 363 92 PTHR12428 none none IPR001708
Pfam 131 348 218 PF02096 none 60Kd inner membrane protein IPR001708
Phobius 312 333 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 213 270 58 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 129 129 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 420 480 61 PTHR12428:SF18 none none none
PANTHER 398 404 7 PTHR12428:SF18 none none none
TIGRFAM 131 347 217 TIGR03592 none yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family IPR028055
Phobius 271 291 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 189 212 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 420 480 61 PTHR12428 none none IPR001708
PANTHER 69 241 173 PTHR12428:SF18 none none none
PANTHER 272 363 92 PTHR12428:SF18 none none none

4 Localization

Analysis Start End Length
TMHMM 128 150 22
TMHMM 192 214 22
TMHMM 269 291 22
TMHMM 312 334 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting