Protein : Qrob_P0678280.2 Q. robur
Protein Identifier  ? Qrob_P0678280.2 Organism . Name  Quercus robur
Score  98.2 Score Type  egn
Protein Description  (M=1) PTHR11960:SF12 - EUKARYOTIC TRANSLATION INITIATION FACTOR ISOFORM 4E (PTHR11960:SF12) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 180  
Kegg Orthology  K03259
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259631 1 179 + 179 Gaps:13 82.35 204 82.74 2e-94 eukaryotic translation initiation factor 4E-2-like
blastp_kegg lcl|tcc:TCM_020973 1 179 + 179 Gaps:9 82.52 206 85.88 1e-92 Eukaryotic initiation factor 4E protein
blastp_kegg lcl|cic:CICLE_v10005943mg 31 179 + 149 Gaps:7 72.08 197 90.14 1e-90 hypothetical protein
blastp_kegg lcl|pda:103703899 1 179 + 179 Gaps:12 81.86 204 79.64 4e-89 eukaryotic translation initiation factor isoform 4E-2-like
blastp_kegg lcl|cit:102610440 33 179 + 147 Gaps:7 71.07 197 90.00 7e-89 eukaryotic translation initiation factor isoform 4E-2-like
blastp_kegg lcl|pxb:103927034 5 179 + 175 Gaps:12 76.89 212 77.91 1e-88 eukaryotic translation initiation factor isoform 4E-2-like
blastp_kegg lcl|csv:101208495 31 179 + 149 Gaps:7 69.95 203 86.62 4e-88 EIF(ISO)4E eukaryotic translation initiation factor 4E-2-like
blastp_kegg lcl|pper:PRUPE_ppa011357mg 16 179 + 164 Gaps:10 71.96 214 81.82 7e-88 hypothetical protein
blastp_kegg lcl|pda:103715416 30 179 + 150 Gaps:7 70.44 203 87.41 8e-88 eukaryotic translation initiation factor isoform 4E-2-like
blastp_kegg lcl|pmum:103323922 16 179 + 164 Gaps:10 72.30 213 81.82 9e-88 eukaryotic translation initiation factor isoform 4E-2
blastp_pdb 2idr_B 33 179 + 147 Gaps:8 78.53 177 58.99 7e-55 mol:protein length:177 Eukaryotic translation initiation factor 4E-1
blastp_pdb 2idr_A 33 179 + 147 Gaps:8 78.53 177 58.99 7e-55 mol:protein length:177 Eukaryotic translation initiation factor 4E-1
blastp_pdb 2idv_A 33 179 + 147 Gaps:8 78.53 177 58.27 2e-53 mol:protein length:177 Eukaryotic translation initiation factor 4E-1
blastp_pdb 2wmc_H 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_G 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_F 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_E 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_D 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_C 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_pdb 2wmc_B 32 179 + 148 Gaps:8 78.65 178 57.14 2e-52 mol:protein length:178 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
blastp_uniprot_sprot sp|Q03389|IF4E2_WHEAT 30 179 + 150 Gaps:7 68.42 209 80.42 6e-82 Eukaryotic translation initiation factor isoform 4E-2 OS Triticum aestivum PE 1 SV 1
blastp_uniprot_sprot sp|P48600|IF4E2_ORYSJ 11 179 + 169 Gaps:11 80.58 206 72.89 4e-79 Eukaryotic translation initiation factor isoform 4E-2 OS Oryza sativa subsp. japonica GN Os10g0467600 PE 2 SV 2
blastp_uniprot_sprot sp|O81482|IF4E2_MAIZE 13 179 + 167 Gaps:13 71.30 216 74.03 3e-77 Eukaryotic translation initiation factor isoform 4E-2 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|O04663|IF4E4_ARATH 1 176 + 176 Gaps:20 82.83 198 71.34 8e-72 Eukaryotic translation initiation factor isoform 4E OS Arabidopsis thaliana GN EIF(ISO)4E PE 1 SV 2
blastp_uniprot_sprot sp|O81481|IF4E1_MAIZE 1 179 + 179 Gaps:20 83.03 218 54.14 3e-55 Eukaryotic translation initiation factor 4E-1 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|P29557|IF4E1_WHEAT 33 179 + 147 Gaps:8 64.65 215 58.99 3e-54 Eukaryotic translation initiation factor 4E-1 OS Triticum aestivum PE 1 SV 3
blastp_uniprot_sprot sp|P48599|IF4E1_ORYSJ 35 179 + 145 Gaps:10 60.35 227 63.50 5e-54 Eukaryotic translation initiation factor 4E-1 OS Oryza sativa subsp. japonica GN Os01g0970400 PE 2 SV 1
blastp_uniprot_sprot sp|O23252|IF4E1_ARATH 31 179 + 149 Gaps:8 60.00 235 56.03 2e-50 Eukaryotic translation initiation factor 4E-1 OS Arabidopsis thaliana GN EIF4E1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C7P6|IF4E3_ARATH 28 179 + 152 Gaps:8 60.00 240 53.47 3e-48 Eukaryotic translation initiation factor 4E-3 OS Arabidopsis thaliana GN EIF4E3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C7P2|IF4E2_ARATH 28 179 + 152 Gaps:8 60.00 240 52.08 2e-47 Eukaryotic translation initiation factor 4E-2 OS Arabidopsis thaliana GN EIF4E2 PE 1 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 23 176 154 SSF55418 none none IPR023398
PANTHER 8 179 172 PTHR11960:SF12 none none none
ProSitePatterns 89 112 24 PS00813 none Eukaryotic initiation factor 4E signature. IPR019770
PANTHER 8 179 172 PTHR11960 none none IPR001040
Pfam 35 177 143 PF01652 none Eukaryotic initiation factor 4E IPR001040
Gene3D 15 177 163 G3DSA:3.30.760.10 none none IPR023398

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting