Protein : Qrob_P0677930.2 Q. robur
Protein Identifier  ? Qrob_P0677930.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K03043 - DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 542  
Kegg Orthology  K03043
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:10251497 75 510 + 436 Gaps:3 40.47 1070 90.07 0.0 rpoB FvH4_C0019 RNA polymerase beta subunit
blastp_kegg lcl|atr:s00626p00011520 72 510 + 439 Gaps:5 85.71 511 88.36 0.0 AMTR_s00626p00011520 hypothetical protein
blastp_kegg lcl|tcc:ThcaC_p013 75 510 + 436 Gaps:3 40.47 1070 90.07 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|vvi:4025099 72 510 + 439 Gaps:5 40.93 1070 89.27 0.0 rpoB ViviCp013 RNA polymerase beta chain
blastp_kegg lcl|pmum:18668009 75 510 + 436 Gaps:3 40.47 1070 89.84 0.0 rpoB CP95_p075 RNA polymerase beta subunit
blastp_kegg lcl|pper:PrpeC_p013 75 510 + 436 Gaps:3 40.47 1070 89.61 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|rcu:RCOM_ORF00021 75 510 + 436 Gaps:3 40.47 1070 88.45 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|cam:6797471 75 510 + 436 Gaps:3 40.47 1070 87.99 0.0 rpoB CiarC_p019 RNA polymerase beta subunit
blastp_kegg lcl|sot:4099994 75 510 + 436 Gaps:3 40.47 1070 88.45 0.0 rpoB SotuCp013 RNA polymerase beta chain
blastp_kegg lcl|sly:3950478 75 510 + 436 Gaps:3 40.47 1070 88.45 0.0 rpoB LyesC2p077 RNA polymerase beta subunit
blastp_pdb 3eql_M 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3eql_C 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3dxj_M 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3dxj_C 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3aoi_M 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_H 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_C 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_M 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_H 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_C 75 534 + 460 Gaps:7 40.66 1119 44.84 8e-116 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_uniprot_sprot sp|Q0ZJ28|RPOB_VITVI 72 510 + 439 Gaps:5 40.93 1070 89.27 0.0 DNA-directed RNA polymerase subunit beta OS Vitis vinifera GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A6MM28|RPOB_BUXMI 75 510 + 436 Gaps:3 40.47 1070 90.30 0.0 DNA-directed RNA polymerase subunit beta OS Buxus microphylla GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9M7|RPOB_LIRTU 75 510 + 436 Gaps:3 40.47 1070 89.61 0.0 DNA-directed RNA polymerase subunit beta OS Liriodendron tulipifera GN rpoB PE 3 SV 2
blastp_uniprot_sprot sp|Q8S8X9|RPOB_ATRBE 75 510 + 436 Gaps:3 40.47 1070 89.61 0.0 DNA-directed RNA polymerase subunit beta OS Atropa belladonna GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q33C46|RPOB_NICTO 75 510 + 436 Gaps:3 40.47 1070 89.38 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tomentosiformis GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|P06271|RPOB_TOBAC 75 510 + 436 Gaps:3 40.47 1070 89.38 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tabacum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1G7|RPOB_NICSY 75 510 + 436 Gaps:3 40.47 1070 89.38 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana sylvestris GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2L8Z9|RPOB_GOSHI 75 510 + 436 Gaps:3 40.47 1070 89.61 0.0 DNA-directed RNA polymerase subunit beta OS Gossypium hirsutum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ27|RPOB_GOSBA 75 510 + 436 Gaps:3 40.47 1070 89.61 0.0 DNA-directed RNA polymerase subunit beta OS Gossypium barbadense GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q68S14|RPOB_PANGI 75 510 + 436 Gaps:3 40.43 1071 88.91 0.0 DNA-directed RNA polymerase subunit beta OS Panax ginseng GN rpoB PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 79 339 261 PTHR20856:SF20 none none none
Gene3D 292 346 55 G3DSA:3.90.1100.10 none none none
Gene3D 79 225 147 G3DSA:3.90.1100.10 none none none
PANTHER 79 339 261 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 390 510 121 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 390 510 121 PTHR20856:SF20 none none none
Pfam 146 214 69 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
Gene3D 422 452 31 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Pfam 296 510 215 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
SUPERFAMILY 78 510 433 SSF64484 none none none
Pfam 84 141 58 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Gene3D 455 510 56 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
Gene3D 348 421 74 G3DSA:2.40.50.100 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting