Protein : Qrob_P0676520.2 Q. robur
Protein Identifier  ? Qrob_P0676520.2 Organism . Name  Quercus robur
Protein Description  (M=7) PF02309//PF02362//PF06507 - AUX/IAA family // B3 DNA binding domain // Auxin response factor Alias (in v1)  Qrob_P0910290.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 746  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250592 34 744 + 711 Gaps:58 94.28 769 64.14 0.0 auxin response factor 2-like
blastp_kegg lcl|tcc:TCM_008374 32 744 + 713 Gaps:68 93.50 816 59.37 0.0 Auxin response factor 2 isoform 1
blastp_kegg lcl|pop:POPTR_0003s16210g 33 745 + 713 Gaps:21 90.26 780 62.07 0.0 POPTRDRAFT_830919 hypothetical protein
blastp_kegg lcl|vvi:100268072 26 743 + 718 Gaps:81 90.84 862 57.47 0.0 auxin response factor 2-like
blastp_kegg lcl|rcu:RCOM_1438160 22 745 + 724 Gaps:75 97.20 787 58.56 0.0 transcription factor putative
blastp_kegg lcl|pop:POPTR_0001s13110g 32 745 + 714 Gaps:53 92.80 792 60.14 0.0 POPTRDRAFT_179307 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s10790g 32 743 + 712 Gaps:76 90.87 854 55.28 0.0 POPTRDRAFT_834367 auxin response factor 2 family protein
blastp_kegg lcl|cit:102577963 1 742 + 742 Gaps:87 94.68 846 55.18 0.0 ARF auxin-response factor
blastp_kegg lcl|pda:103708057 32 743 + 712 Gaps:75 90.50 863 54.93 0.0 auxin response factor 23-like
blastp_kegg lcl|tcc:TCM_014743 5 745 + 741 Gaps:67 94.16 856 53.23 0.0 Auxin response factor-like protein isoform 1
blastp_pdb 1wid_A 145 233 + 89 none 68.46 130 31.46 3e-06 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q94JM3|ARFB_ARATH 12 743 + 732 Gaps:83 92.32 859 52.71 0.0 Auxin response factor 2 OS Arabidopsis thaliana GN ARF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q2R3F5|ARFW_ORYSJ 39 743 + 705 Gaps:87 91.21 853 52.57 0.0 Auxin response factor 23 OS Oryza sativa subsp. japonica GN ARF23 PE 1 SV 2
blastp_uniprot_sprot sp|A2ZET6|ARFW_ORYSI 39 743 + 705 Gaps:87 91.21 853 52.57 0.0 Auxin response factor 23 OS Oryza sativa subsp. indica GN ARF23 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JK20|ARFD_ORYSJ 37 745 + 709 Gaps:75 94.80 808 49.87 0.0 Auxin response factor 4 OS Oryza sativa subsp. japonica GN ARF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QQX6|ARFX_ORYSJ 37 743 + 707 Gaps:106 92.39 841 49.68 0.0 Auxin response factor 24 OS Oryza sativa subsp. japonica GN ARF24 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YVY0|ARFG_ORYSJ 37 745 + 709 Gaps:26 76.70 678 57.12 7e-162 Auxin response factor 7 OS Oryza sativa subsp. japonica GN ARF7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L7G0|ARFA_ARATH 37 745 + 709 Gaps:22 88.42 665 52.55 1e-160 Auxin response factor 1 OS Arabidopsis thaliana GN ARF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q0JCZ4|ARFI_ORYSJ 30 745 + 716 Gaps:26 79.49 673 55.14 6e-157 Auxin response factor 9 OS Oryza sativa subsp. japonica GN ARF9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C5W9|ARFR_ARATH 20 741 + 722 Gaps:14 76.74 602 58.01 9e-148 Auxin response factor 18 OS Arabidopsis thaliana GN ARF18 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPY6|ARFK_ARATH 34 745 + 712 Gaps:45 83.60 622 54.81 4e-146 Auxin response factor 11 OS Arabidopsis thaliana GN ARF11 PE 2 SV 3
rpsblast_cdd gnl|CDD|191545 271 353 + 83 none 100.00 83 53.01 7e-36 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 145 246 + 102 Gaps:6 98.97 97 35.42 8e-23 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|202200 646 745 + 100 Gaps:6 56.38 188 28.30 3e-22 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|198087 145 246 + 102 Gaps:6 100.00 96 36.46 8e-21 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 143 245 + 103 Gaps:7 100.00 98 29.59 7e-16 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 139 274 136 SSF101936 none none IPR015300
Pfam 271 353 83 PF06507 none Auxin response factor IPR010525
SMART 145 247 103 SM01019 none B3 DNA binding domain IPR003340
Pfam 648 744 97 PF02309 none AUX/IAA family IPR003311
PANTHER 17 745 729 PTHR31384:SF7 none none none
ProSiteProfiles 653 745 93 PS51745 none PB1 domain profile. IPR000270
Gene3D 136 260 125 G3DSA:2.40.330.10 none none IPR015300
Pfam 145 245 101 PF02362 none B3 DNA binding domain IPR003340
ProSiteProfiles 145 247 103 PS50863 none B3 DNA-binding domain profile. IPR003340
PANTHER 17 745 729 PTHR31384 none none none
SUPERFAMILY 651 731 81 SSF54277 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting