Protein : Qrob_P0675650.2 Q. robur
Protein Identifier  ? Qrob_P0675650.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR13296 - BCAS2 PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 88  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102608089 1 83 + 83 Gaps:4 34.25 254 72.41 2e-35 pre-mRNA-splicing factor SPF27 homolog
blastp_kegg lcl|pper:PRUPE_ppa010316mg 1 87 + 87 Gaps:2 33.46 254 72.94 3e-35 hypothetical protein
blastp_kegg lcl|pmum:103338727 1 87 + 87 Gaps:2 33.46 254 71.76 4e-35 pre-mRNA-splicing factor SPF27 homolog
blastp_kegg lcl|pop:POPTR_0015s04220g 2 86 + 85 Gaps:2 32.55 255 73.49 8e-35 POPTRDRAFT_574967 hypothetical protein
blastp_kegg lcl|vvi:100254130 1 87 + 87 Gaps:2 33.20 256 71.76 1e-34 pre-mRNA-splicing factor SPF27 homolog-like
blastp_kegg lcl|tcc:TCM_027148 1 86 + 86 Gaps:2 33.20 253 73.81 1e-34 Modifier of snc1 4 isoform 1
blastp_kegg lcl|mdm:103428322 1 87 + 87 Gaps:2 32.95 258 70.59 7e-33 pre-mRNA-splicing factor SPF27 homolog
blastp_kegg lcl|pxb:103939429 1 87 + 87 Gaps:2 32.95 258 69.41 2e-32 pre-mRNA-splicing factor SPF27 homolog
blastp_kegg lcl|cam:101508673 1 87 + 87 Gaps:2 34.55 246 70.59 2e-32 pre-mRNA-splicing factor SPF27 homolog
blastp_kegg lcl|cam:101493280 1 87 + 87 Gaps:2 86.73 98 71.76 3e-32 pre-mRNA-splicing factor SPF27 homolog
blastp_uniprot_sprot sp|Q949S9|SPF27_ARATH 1 77 + 77 none 30.43 253 61.04 4e-27 Pre-mRNA-splicing factor SPF27 homolog OS Arabidopsis thaliana GN MOS4 PE 1 SV 1
rpsblast_cdd gnl|CDD|191346 1 70 + 70 none 31.67 221 38.57 2e-13 pfam05700 BCAS2 Breast carcinoma amplified sequence 2 (BCAS2). This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein.
rpsblast_kog gnl|CDD|38306 1 77 + 77 Gaps:2 33.33 225 38.67 7e-10 KOG3096 KOG3096 KOG3096 Spliceosome-associated coiled-coil protein [Function unknown].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 70 70 PTHR13296:SF0 none none IPR008409
Pfam 1 71 71 PF05700 none Breast carcinoma amplified sequence 2 (BCAS2) IPR008409
PANTHER 1 70 70 PTHR13296 none none none
Coils 44 68 25 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting