Protein : Qrob_P0668910.2 Q. robur
Protein Identifier  ? Qrob_P0668910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15306 - Ran-binding protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 233  
Kegg Orthology  K15306
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046907 intracellular transport The directed movement of substances within a cell.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_021657 6 232 + 227 Gaps:11 95.58 226 78.70 2e-112 Ran-binding protein 1 b isoform 1
blastp_kegg lcl|tcc:TCM_042170 1 213 + 213 Gaps:3 93.75 224 77.62 5e-112 Ran-binding protein 1 b
blastp_kegg lcl|vvi:100243801 1 232 + 232 Gaps:15 99.10 221 76.71 3e-109 ran-binding protein 1 homolog c-like
blastp_kegg lcl|pop:POPTR_0009s07750g 1 207 + 207 Gaps:2 94.04 218 76.59 1e-107 POPTRDRAFT_557663 RAN BINDING protein 1
blastp_kegg lcl|pop:POPTR_0001s28550g 1 214 + 214 Gaps:4 96.33 218 76.67 4e-105 RAN BINDING protein 1
blastp_kegg lcl|vvi:100257001 26 213 + 188 Gaps:1 83.86 223 81.28 2e-104 ran-binding protein 1 homolog c-like
blastp_kegg lcl|cmo:103497064 9 204 + 196 Gaps:2 89.81 216 78.87 5e-104 ran-binding protein 1 homolog a-like
blastp_kegg lcl|csv:101204664 9 204 + 196 Gaps:1 90.28 216 76.92 2e-103 ran-binding protein 1 homolog b-like
blastp_kegg lcl|csv:101208327 9 204 + 196 Gaps:1 90.28 216 76.92 2e-103 ran-binding protein 1 homolog b-like
blastp_kegg lcl|rcu:RCOM_1474140 7 216 + 210 none 96.77 217 71.43 7e-103 ran binding protein putative
blastp_pdb 1k5g_K 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5g_H 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5g_E 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5g_B 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5d_K 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5d_H 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5d_E 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 1k5d_B 13 157 + 145 Gaps:3 73.63 201 46.62 1e-37 mol:protein length:201 Ran-specific GTPase-activating protein
blastp_pdb 3m1i_B 3 164 + 162 Gaps:5 87.43 191 42.51 2e-37 mol:protein length:191 Ran-specific GTPase-activating protein 1
blastp_pdb 1rrp_D 32 157 + 126 Gaps:1 94.78 134 48.82 1e-35 mol:protein length:134 NUCLEAR PORE COMPLEX PROTEIN NUP358
blastp_uniprot_sprot sp|Q8RWG8|RBP1B_ARATH 3 214 + 212 Gaps:7 94.47 217 74.63 3e-98 Ran-binding protein 1 homolog b OS Arabidopsis thaliana GN RANBP1B PE 1 SV 2
blastp_uniprot_sprot sp|Q9LMK7|RBP1A_ARATH 1 183 + 183 Gaps:2 79.39 228 76.24 8e-95 Ran-binding protein 1 homolog a OS Arabidopsis thaliana GN RANBP1A PE 1 SV 1
blastp_uniprot_sprot sp|P92985|RBP1C_ARATH 1 183 + 183 Gaps:3 82.19 219 72.22 4e-94 Ran-binding protein 1 homolog c OS Arabidopsis thaliana GN RANBP1C PE 2 SV 1
blastp_uniprot_sprot sp|P34022|RANG_MOUSE 13 183 + 171 Gaps:8 88.18 203 43.58 3e-38 Ran-specific GTPase-activating protein OS Mus musculus GN Ranbp1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3T0M7|RANG_BOVIN 13 155 + 143 Gaps:3 70.87 206 47.26 3e-37 Ran-specific GTPase-activating protein OS Bos taurus GN RANBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P43487|RANG_HUMAN 13 157 + 145 Gaps:3 73.63 201 46.62 4e-37 Ran-specific GTPase-activating protein OS Homo sapiens GN RANBP1 PE 1 SV 1
blastp_uniprot_sprot sp|P41920|YRB1_YEAST 3 164 + 162 Gaps:5 83.08 201 42.51 6e-37 Ran-specific GTPase-activating protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN YRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q09717|RANG_SCHPO 32 164 + 133 Gaps:1 62.33 215 50.75 3e-36 Ran-specific GTPase-activating protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sbp1 PE 1 SV 1
blastp_uniprot_sprot sp|P48820|RBP2_BOVIN 13 171 + 159 Gaps:2 26.91 1085 42.12 3e-34 E3 SUMO-protein ligase RanBP2 (Fragment) OS Bos taurus GN RANBP2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ERU9|RBP2_MOUSE 13 164 + 152 Gaps:5 18.57 3053 43.03 7e-34 E3 SUMO-protein ligase RanBP2 OS Mus musculus GN Ranbp2 PE 1 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 29 164 136 PS50196 none Ran binding domain type 1 profile. IPR000156
Gene3D 37 162 126 G3DSA:2.30.29.30 none none IPR011993
PANTHER 12 220 209 PTHR23138 none none none
Pfam 41 158 118 PF00638 none RanBP1 domain IPR000156
SMART 30 158 129 SM00160 none Ran-binding domain IPR000156
SUPERFAMILY 32 159 128 SSF50729 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting