Protein : Qrob_P0668630.2 Q. robur
Protein Identifier  ? Qrob_P0668630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K18812 - cyclin D6, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 315  
Kegg Orthology  K18812
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa008931mg 1 314 + 314 Gaps:1 100.00 313 69.01 2e-158 hypothetical protein
blastp_kegg lcl|pop:POPTR_0019s14110g 1 309 + 309 Gaps:5 96.91 324 68.15 2e-154 POPTRDRAFT_574576 hypothetical protein
blastp_kegg lcl|fve:101297411 1 311 + 311 Gaps:1 96.27 322 69.68 1e-153 putative cyclin-D6-1-like
blastp_kegg lcl|mdm:103442561 1 310 + 310 Gaps:4 97.18 319 67.74 4e-147 putative cyclin-D6-1
blastp_kegg lcl|mdm:103411256 1 310 + 310 Gaps:4 97.18 319 67.74 4e-147 putative cyclin-D6-1
blastp_kegg lcl|pxb:103944476 1 310 + 310 Gaps:4 97.18 319 67.42 2e-146 putative cyclin-D6-1
blastp_kegg lcl|tcc:TCM_007869 1 285 + 285 Gaps:1 99.31 288 74.13 2e-146 D6-type cyclin
blastp_kegg lcl|gmx:100799951 1 314 + 314 Gaps:8 100.00 316 60.76 4e-138 putative cyclin-D6-1-like
blastp_kegg lcl|pvu:PHAVU_005G109600g 1 314 + 314 Gaps:12 100.00 312 61.22 1e-137 hypothetical protein
blastp_kegg lcl|gmx:100811659 1 314 + 314 Gaps:9 100.00 315 60.63 9e-137 putative cyclin-D6-1-like
blastp_pdb 1w98_B 70 202 + 133 Gaps:13 48.76 283 30.43 6e-08 mol:protein length:283 G1/S-SPECIFIC CYCLIN E1
blastp_pdb 3g33_D 20 209 + 190 Gaps:14 61.44 306 25.53 1e-07 mol:protein length:306 CCND3 protein
blastp_pdb 3g33_B 20 209 + 190 Gaps:14 61.44 306 25.53 1e-07 mol:protein length:306 CCND3 protein
blastp_pdb 2w9f_A 22 196 + 175 Gaps:20 63.84 271 28.32 3e-07 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w99_A 22 196 + 175 Gaps:20 63.84 271 28.32 3e-07 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w96_A 22 196 + 175 Gaps:20 63.84 271 28.32 3e-07 mol:protein length:271 G1/S-SPECIFIC CYCLIN-D1
blastp_pdb 2w9z_A 22 196 + 175 Gaps:20 67.32 257 28.32 4e-07 mol:protein length:257 G1/S-SPECIFIC CYCLIN-D1
blastp_uniprot_sprot sp|Q9ZR04|CCD61_ARATH 1 295 + 295 Gaps:22 99.67 302 53.82 2e-96 Putative cyclin-D6-1 OS Arabidopsis thaliana GN CYCD6-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q69S43|CCD61_ORYSJ 2 299 + 298 Gaps:24 90.62 320 39.66 3e-46 Cyclin-D6-1 OS Oryza sativa subsp. japonica GN CYCD6-1 PE 2 SV 1
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 14 245 + 232 Gaps:12 70.21 339 38.24 3e-42 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 8 209 + 202 Gaps:8 67.53 308 40.38 2e-41 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2
blastp_uniprot_sprot sp|Q0J233|CCD21_ORYSJ 23 244 + 222 Gaps:17 69.16 308 40.38 7e-38 Cyclin-D2-1 OS Oryza sativa subsp. japonica GN CYCD2-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q8LHA8|CCD22_ORYSJ 17 297 + 281 Gaps:22 81.74 356 34.02 4e-36 Cyclin-D2-2 OS Oryza sativa subsp. japonica GN CYCD2-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q69QB8|CCD31_ORYSJ 27 297 + 271 Gaps:20 80.99 342 35.38 4e-36 Cyclin-D3-1 OS Oryza sativa subsp. japonica GN CYCD3-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 23 297 + 275 Gaps:34 79.49 356 35.69 5e-36 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q4KYM5|CCD42_ORYSJ 21 241 + 221 Gaps:10 58.22 383 37.67 2e-35 Cyclin-D4-2 OS Oryza sativa subsp. japonica GN CYCD4-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q0WQN9|CCD42_ARATH 2 208 + 207 Gaps:24 76.85 298 35.81 5e-35 Cyclin-D4-2 OS Arabidopsis thaliana GN CYCD4-2 PE 1 SV 2
rpsblast_cdd gnl|CDD|201025 20 146 + 127 Gaps:12 98.43 127 32.80 3e-15 pfam00134 Cyclin_N Cyclin N-terminal domain. Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold of which this family corresponds with the N-terminal domain.
rpsblast_kog gnl|CDD|35875 19 292 + 274 Gaps:10 82.99 335 31.29 1e-46 KOG0656 KOG0656 KOG0656 G1/S-specific cyclin D [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35874 70 202 + 133 Gaps:13 33.82 408 31.16 3e-11 KOG0655 KOG0655 KOG0655 G1/S-specific cyclin E [Cell cycle control cell division chromosome partitioning].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 241 241 PTHR10177 none none none
Gene3D 140 245 106 G3DSA:1.10.472.10 none none IPR013763
PANTHER 1 241 241 PTHR10177:SF188 none none IPR031093
SUPERFAMILY 11 145 135 SSF47954 none none IPR013763
SUPERFAMILY 130 244 115 SSF47954 none none IPR013763
Pfam 148 245 98 PF02984 none Cyclin, C-terminal domain IPR004367
Pfam 20 145 126 PF00134 none Cyclin, N-terminal domain IPR006671
SMART 152 241 90 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
SMART 51 139 89 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Gene3D 34 139 106 G3DSA:1.10.472.10 none none IPR013763

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting