Protein : Qrob_P0665860.2 Q. robur
Protein Identifier  ? Qrob_P0665860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10978 - SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT Code Enzyme  EC:1.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 366  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102602875 1 87 + 87 none 80.56 108 93.10 1e-46 succinate dehydrogenase cytochrome b560 subunit-like
blastp_kegg lcl|vvi:7498669 2 87 + 86 none 51.19 168 94.19 4e-46 sdh3 ViviM_p032 succinate dehydrogenase subunit 3
blastp_kegg lcl|rcu:RCOM_Mp16 1 87 + 87 none 84.47 103 89.66 4e-45 sdh3 succinate dehydrogenase subunit 3
blastp_kegg lcl|csv:11123870 1 87 + 87 none 82.86 105 89.66 4e-45 sdh3 CusaM_p19 succinate dehydrogenase subunit 3
blastp_kegg lcl|atr:s05677p00002800 229 318 + 90 none 70.87 127 83.33 3e-39 AMTR_s05677p00002800 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s29170g 1 87 + 87 Gaps:1 31.21 282 75.00 3e-34 POPTRDRAFT_815726 hypothetical protein
blastp_kegg lcl|rcu:RCOM_2136790 225 293 + 69 none 98.57 70 94.20 7e-34 hypothetical protein
blastp_kegg lcl|rcu:RCOM_2018870 225 293 + 69 none 98.57 70 94.20 7e-34 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s08910g 2 87 + 86 Gaps:1 30.85 282 70.11 5e-29 POPTRDRAFT_252128 hypothetical protein
blastp_kegg lcl|mdm:103449071 1 87 + 87 Gaps:1 44.10 195 67.44 6e-29 uncharacterized LOC103449071
blastp_uniprot_sprot sp|O05000|NU2M_ARATH 231 278 + 48 none 9.62 499 89.58 1e-18 NADH-ubiquinone oxidoreductase chain 2 OS Arabidopsis thaliana GN ND2 PE 2 SV 2
blastp_uniprot_sprot sp|P93401|NU2M_OENBE 232 278 + 47 none 9.63 488 91.49 3e-18 NADH-ubiquinone oxidoreductase chain 2 OS Oenothera berteroana GN ND2 PE 2 SV 2
blastp_uniprot_sprot sp|P35721|C560_MARPO 1 87 + 87 Gaps:5 65.69 137 60.00 9e-16 Succinate dehydrogenase cytochrome b560 subunit OS Marchantia polymorpha GN SDH3 PE 3 SV 1
blastp_uniprot_sprot sp|P26846|NU2M_MARPO 236 282 + 47 none 9.61 489 82.98 5e-15 NADH-ubiquinone oxidoreductase chain 2 OS Marchantia polymorpha GN ND2 PE 3 SV 2
blastp_uniprot_sprot sp|P80481|C560_RECAM 1 87 + 87 Gaps:15 62.50 144 40.00 3e-07 Succinate dehydrogenase cytochrome b560 subunit OS Reclinomonas americana GN SDH3 PE 3 SV 1
blastp_uniprot_sprot sp|Q68XP1|DHSC_RICTY 5 87 + 83 Gaps:10 62.10 124 44.16 7e-07 Succinate dehydrogenase cytochrome b556 subunit OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN sdhC PE 3 SV 1
blastp_uniprot_sprot sp|P41085|DHSC_RICPR 5 87 + 83 Gaps:6 62.10 124 44.16 7e-07 Succinate dehydrogenase cytochrome b556 subunit OS Rickettsia prowazekii (strain Madrid E) GN sdhC PE 3 SV 1
blastp_uniprot_sprot sp|Q4UKC1|DHSC_RICFE 5 87 + 83 Gaps:6 62.10 124 44.16 2e-06 Succinate dehydrogenase cytochrome b556 subunit OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN sdhC PE 3 SV 1
blastp_uniprot_sprot sp|Q92J99|DHSC_RICCN 5 87 + 83 Gaps:6 62.10 124 42.86 6e-06 Succinate dehydrogenase cytochrome b556 subunit OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN sdhC PE 3 SV 1
rpsblast_cdd gnl|CDD|177741 4 82 + 79 none 37.09 213 45.57 4e-16 PLN00130 PLN00130 succinate dehydrogenase (SDH3) Provisional.
rpsblast_cdd gnl|CDD|48060 5 87 + 83 Gaps:2 69.23 117 34.57 4e-11 cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily Succinate dehydrogenase C (SdhC) subunit composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration allowing transfer of electrons between respiratory complexes..
rpsblast_cdd gnl|CDD|201612 1 87 + 87 Gaps:2 72.36 123 39.33 5e-10 pfam01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit. This family includes a transmembrane protein from both the Succinate dehydrogenase and Fumarate reductase complexes.
rpsblast_cdd gnl|CDD|200223 5 92 + 88 Gaps:8 71.67 120 34.88 2e-09 TIGR02970 succ_dehyd_cytB succinate dehydrogenase cytochrome b556 subunit. In E. coli and many other bacteria two small hydrophobic mutually homologous subunits of succinate dehydrogenase a TCA cycle enzyme are SdhC and SdhD. This family is the SdhC the cytochrome b subunit called b556 in bacteria and b560 in mitochondria. SdhD (see TIGR02968) is called the hydrophobic membrane anchor subunit although both SdhC and SdhD participate in anchoring the complex. In some bacteria this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see TIGR02046).
rpsblast_cdd gnl|CDD|165700 1 49 + 49 Gaps:6 25.23 218 50.91 2e-07 PLN00131 PLN00131 hypothetical protein Provisional.
rpsblast_kog gnl|CDD|35670 5 87 + 83 Gaps:2 49.40 168 39.76 6e-12 KOG0449 KOG0449 KOG0449 Succinate dehydrogenase cytochrome b subunit [Carbohydrate transport and metabolism].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 270 287 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 37 171 135 PF03317 none ELF protein IPR004990
Phobius 288 365 78 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 90 109 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 87 87 PTHR10978 none none none
Phobius 259 269 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 55 65 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 1 92 92 PF01127 "UniPathway:UPA00223" Succinate dehydrogenase/Fumarate reductase transmembrane subunit IPR000701
Gene3D 4 89 86 G3DSA:1.20.1300.10 none none none
Phobius 110 232 123 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 233 258 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 66 84 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1 90 90 SSF81343 none none none
Phobius 31 54 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 85 89 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 30 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 62 84 22
TMHMM 28 50 22
TMHMM 237 259 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting