Protein : Qrob_P0663930.2 Q. robur
Protein Identifier  ? Qrob_P0663930.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08064 - nuclear transcription factor Y, alpha Gene Prediction Quality  validated
Protein length 

Sequence

Length: 338  
Kegg Orthology  K08064
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0016602 CCAAT-binding factor complex A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326841 1 337 + 337 Gaps:16 100.00 351 72.08 2e-153 nuclear transcription factor Y subunit A-1
blastp_kegg lcl|cic:CICLE_v10015808mg 1 337 + 337 Gaps:18 100.00 347 69.16 2e-147 hypothetical protein
blastp_kegg lcl|cit:102628969 1 337 + 337 Gaps:18 100.00 347 69.16 2e-147 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|mdm:103407545 1 337 + 337 Gaps:17 100.00 348 70.69 2e-146 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|tcc:TCM_040712 1 337 + 337 Gaps:40 100.00 315 74.92 4e-146 Nuclear transcription factor Y subunit A-9 putative
blastp_kegg lcl|pxb:103935643 1 337 + 337 Gaps:27 100.00 358 67.88 2e-145 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|pxb:103955912 1 337 + 337 Gaps:17 100.00 348 69.54 5e-144 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|pxb:103963815 1 337 + 337 Gaps:27 100.00 358 67.32 7e-143 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|cam:101504175 1 337 + 337 Gaps:14 100.00 337 68.25 5e-138 nuclear transcription factor Y subunit A-1-like
blastp_kegg lcl|gmx:100808378 1 320 + 320 Gaps:16 98.82 338 67.07 2e-133 nuclear transcription factor Y subunit A-1-like
blastp_uniprot_sprot sp|Q9LXV5|NFYA1_ARATH 1 273 + 273 Gaps:25 100.00 272 56.62 2e-84 Nuclear transcription factor Y subunit A-1 OS Arabidopsis thaliana GN NFYA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q945M9|NFYA9_ARATH 1 337 + 337 Gaps:49 98.35 303 55.03 4e-79 Nuclear transcription factor Y subunit A-9 OS Arabidopsis thaliana GN NFYA9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VY64|NFYA4_ARATH 127 259 + 133 Gaps:7 67.68 198 47.01 1e-28 Nuclear transcription factor Y subunit A-4 OS Arabidopsis thaliana GN NFYA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q84JP1|NFYA7_ARATH 120 256 + 137 Gaps:3 72.63 190 46.38 9e-28 Nuclear transcription factor Y subunit A-7 OS Arabidopsis thaliana GN NFYA7 PE 2 SV 1
blastp_uniprot_sprot sp|Q93ZH2|NFYA3_ARATH 128 238 + 111 Gaps:5 34.12 340 50.86 1e-27 Nuclear transcription factor Y subunit A-3 OS Arabidopsis thaliana GN NFYA3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNP6|NFYA8_ARATH 128 222 + 95 Gaps:6 28.35 328 56.99 6e-26 Nuclear transcription factor Y subunit A-8 OS Arabidopsis thaliana GN NFYA8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYH4|NFYA5_ARATH 117 232 + 116 Gaps:9 37.99 308 47.86 3e-25 Nuclear transcription factor Y subunit A-5 OS Arabidopsis thaliana GN NFYA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LVJ7|NFYA6_ARATH 147 232 + 86 Gaps:1 28.25 308 57.47 5e-25 Nuclear transcription factor Y subunit A-6 OS Arabidopsis thaliana GN NFYA6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LFU0|NFYAA_ARATH 127 231 + 105 Gaps:16 35.32 269 57.89 2e-23 Nuclear transcription factor Y subunit A-10 OS Arabidopsis thaliana GN NFYA10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M9X4|NFYA2_ARATH 127 242 + 116 Gaps:21 37.63 295 53.15 2e-21 Nuclear transcription factor Y subunit A-2 OS Arabidopsis thaliana GN NFYA2 PE 2 SV 1
rpsblast_cdd gnl|CDD|190198 166 222 + 57 none 100.00 57 80.70 7e-26 pfam02045 CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B.
rpsblast_cdd gnl|CDD|128795 164 225 + 62 none 100.00 62 72.58 3e-25 smart00521 CBF CCAAT-Binding transcription Factor.
rpsblast_cdd gnl|CDD|34821 165 232 + 68 Gaps:2 26.61 248 42.42 4e-07 COG5224 HAP2 CCAAT-binding factor subunit B [Transcription].
rpsblast_kog gnl|CDD|36774 40 270 + 231 Gaps:12 77.85 307 31.38 1e-24 KOG1561 KOG1561 KOG1561 CCAAT-binding factor subunit B (HAP2) [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 170 190 21 PS00686 none NF-YA/HAP2 subunit signature. IPR018362
PANTHER 50 238 189 PTHR12632 none none IPR001289
PRINTS 168 190 23 PR00616 none CCAAT-binding transcription factor subunit B signature IPR001289
PRINTS 199 222 24 PR00616 none CCAAT-binding transcription factor subunit B signature IPR001289
SMART 164 225 62 SM00521 none CCAAT-Binding transcription Factor IPR001289
Pfam 166 222 57 PF02045 none CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B IPR001289
ProSiteProfiles 165 225 61 PS51152 none NF-YA/HAP2 family profile. IPR001289
PANTHER 50 238 189 PTHR12632:SF7 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting