Protein : Qrob_P0662820.2 Q. robur
Protein Identifier  ? Qrob_P0662820.2 Organism . Name  Quercus robur
Score  97.3 Score Type  egn
Protein Description  (M=2) K07447 - putative holliday junction resolvase [EC:3.1.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 171  
Kegg Orthology  K07447
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0031564 transcription antitermination Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond a termination site.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266792 1 165 + 165 none 97.63 169 81.82 5e-94 putative Holliday junction resolvase-like
blastp_kegg lcl|pop:POPTR_0001s09310g 1 170 + 170 none 100.00 170 77.06 6e-93 POPTRDRAFT_709356 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012236mg 1 170 + 170 none 95.51 178 78.24 5e-91 hypothetical protein
blastp_kegg lcl|pmum:103337465 1 170 + 170 none 91.89 185 77.06 5e-90 uncharacterized LOC103337465
blastp_kegg lcl|rcu:RCOM_1686520 1 170 + 170 Gaps:2 100.00 168 77.98 4e-89 hypothetical protein
blastp_kegg lcl|tcc:TCM_016244 1 169 + 169 none 99.41 170 75.74 2e-85 Polynucleotidyl transferase isoform 1
blastp_kegg lcl|mdm:103454749 1 170 + 170 none 100.00 170 79.41 2e-84 GRF1 uncharacterized LOC103454749
blastp_kegg lcl|pxb:103938484 1 165 + 165 none 97.06 170 81.21 6e-84 uncharacterized LOC103938484
blastp_kegg lcl|pxb:103954811 1 165 + 165 none 97.06 170 81.21 6e-84 uncharacterized LOC103954811
blastp_kegg lcl|pxb:103954805 1 165 + 165 none 97.06 170 81.21 6e-84 uncharacterized LOC103954805
blastp_pdb 1vhx_B 23 162 + 140 Gaps:4 92.00 150 31.16 2e-11 mol:protein length:150 Putative Holliday junction resolvase
blastp_pdb 1vhx_A 23 162 + 140 Gaps:4 92.00 150 31.16 2e-11 mol:protein length:150 Putative Holliday junction resolvase
blastp_uniprot_sprot sp|Q52673|RUVX_RHOCB 22 158 + 137 Gaps:6 83.65 159 37.59 7e-17 Putative Holliday junction resolvase OS Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN yqgF PE 3 SV 2
blastp_uniprot_sprot sp|A4XKC6|RUVX_CALS8 23 161 + 139 Gaps:7 98.55 138 35.29 2e-16 Putative Holliday junction resolvase OS Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN Csac_1776 PE 3 SV 1
blastp_uniprot_sprot sp|A5EKQ4|RUVX_BRASB 15 158 + 144 Gaps:6 86.96 161 35.00 5e-16 Putative Holliday junction resolvase OS Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN BBta_4721 PE 3 SV 1
blastp_uniprot_sprot sp|Q1QL26|RUVX_NITHX 20 158 + 139 Gaps:6 82.82 163 34.81 1e-15 Putative Holliday junction resolvase OS Nitrobacter hamburgensis (strain X14 / DSM 10229) GN Nham_2279 PE 3 SV 2
blastp_uniprot_sprot sp|A4YWF9|RUVX_BRASO 20 161 + 142 Gaps:6 85.71 161 34.06 2e-15 Putative Holliday junction resolvase OS Bradyrhizobium sp. (strain ORS278) GN BRADO4497 PE 3 SV 1
blastp_uniprot_sprot sp|B8GC73|RUVX_CHLAD 24 158 + 135 Gaps:6 92.25 142 33.59 4e-15 Putative Holliday junction resolvase OS Chloroflexus aggregans (strain MD-66 / DSM 9485) GN Cagg_0094 PE 3 SV 1
blastp_uniprot_sprot sp|B8D2B0|RUVX_HALOH 23 162 + 140 Gaps:6 97.14 140 36.03 4e-15 Putative Holliday junction resolvase OS Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN Hore_05800 PE 3 SV 1
blastp_uniprot_sprot sp|Q5NPF1|RUVX_ZYMMO 7 158 + 152 Gaps:11 87.73 163 34.97 4e-15 Putative Holliday junction resolvase OS Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN ZMO0785 PE 3 SV 2
blastp_uniprot_sprot sp|Q0AZP9|RUVX_SYNWW 23 158 + 136 Gaps:6 93.62 141 37.12 5e-15 Putative Holliday junction resolvase OS Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN Swol_0470 PE 3 SV 1
blastp_uniprot_sprot sp|Q89K24|RUVX_BRADU 20 158 + 139 Gaps:6 83.85 161 34.07 1e-14 Putative Holliday junction resolvase OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN blr5094 PE 3 SV 1
rpsblast_cdd gnl|CDD|202719 22 159 + 138 Gaps:6 100.00 134 38.81 5e-27 pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
rpsblast_cdd gnl|CDD|178870 21 158 + 138 Gaps:6 97.10 138 35.07 7e-18 PRK00109 PRK00109 Holliday junction resolvase-like protein Reviewed.
rpsblast_cdd gnl|CDD|31158 21 164 + 144 Gaps:5 100.00 141 32.62 3e-16 COG0816 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|128971 22 124 + 103 Gaps:6 97.98 99 28.87 2e-11 smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues the catalytic residues are substituted indicating that they lack enzymatic functions.
rpsblast_cdd gnl|CDD|129352 25 158 + 134 Gaps:6 100.00 130 29.23 4e-07 TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family which exhibits an RNAse H fold in crystal structure has been proposed as a putative Holliday junction resolvase an alternate to RuvC.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 25 158 134 TIGR00250 none RNAse_H_YqgF: putative transcription antitermination factor YqgF IPR005227
Gene3D 21 164 144 G3DSA:3.30.420.140 none none IPR006641
Pfam 23 158 136 PF03652 none Uncharacterised protein family (UPF0081) IPR005227
SUPERFAMILY 22 161 140 SSF53098 none none IPR012337
SMART 22 126 105 SM00732 none Likely ribonuclease with RNase H fold. IPR006641

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting