Protein : Qrob_P0662760.2 Q. robur
Protein Identifier  ? Qrob_P0662760.2 Organism . Name  Quercus robur
Protein Description  (M=3) PTHR11588//PTHR11588:SF72 - TUBULIN // SUBFAMILY NOT NAMED (PTHR11588:SF72) Alias (in v1)  Qrob_P0697980.1
Code Enzyme  EC:2.4.2.1 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 447  
Kegg Orthology  K07375
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0007017 microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0043234 protein complex A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
GO:0051258 protein polymerization The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO:0005200 structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244399 1 446 + 446 Gaps:2 100.00 444 96.85 0.0 tubulin beta-1 chain-like
blastp_kegg lcl|csv:101223862 1 442 + 442 none 99.33 445 94.80 0.0 tubulin beta-1 chain-like
blastp_kegg lcl|cmo:103482745 1 438 + 438 Gaps:1 99.55 441 95.67 0.0 tubulin beta chain-like
blastp_kegg lcl|gmx:100797652 1 442 + 442 Gaps:1 98.88 446 95.69 0.0 tubulin beta-1 chain-like
blastp_kegg lcl|atr:s00009p00251790 1 446 + 446 none 100.00 446 95.07 0.0 AMTR_s00009p00251790 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s12690g 1 430 + 430 none 96.85 444 97.44 0.0 POPTRDRAFT_646611 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1686680 1 430 + 430 none 96.63 445 97.67 0.0 tubulin beta chain putative
blastp_kegg lcl|cam:101502468 1 446 + 446 Gaps:1 99.33 448 93.93 0.0 tubulin beta-1 chain-like
blastp_kegg lcl|csv:101219333 1 438 + 438 Gaps:9 99.31 432 95.34 0.0 tubulin beta-1 chain-like
blastp_kegg lcl|pvu:PHAVU_002G289100g 1 430 + 430 none 96.41 446 96.28 0.0 hypothetical protein
blastp_pdb 3iz0_B 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 beta tubulin Chain B from PDB 1JFF
blastp_pdb 3edl_G 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 Beta tubulin
blastp_pdb 3edl_B 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 Beta tubulin
blastp_pdb 3dco_B 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 Bovine Beta Tubulin
blastp_pdb 2xrp_G 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 TUBULIN BETA-2B CHAIN
blastp_pdb 2xrp_E 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 TUBULIN BETA-2B CHAIN
blastp_pdb 2xrp_C 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 TUBULIN BETA-2B CHAIN
blastp_pdb 2xrp_A 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 TUBULIN BETA-2B CHAIN
blastp_pdb 2wbe_B 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 TUBULIN BETA-2B CHAIN
blastp_pdb 2p4n_B 1 430 + 430 none 96.63 445 84.42 0.0 mol:protein length:445 Tubulin beta chain
blastp_uniprot_sprot sp|P18025|TBB1_MAIZE 1 430 + 430 none 96.41 446 93.26 0.0 Tubulin beta-1 chain OS Zea mays GN TUBB1 PE 1 SV 1
blastp_uniprot_sprot sp|P12459|TBB1_SOYBN 1 431 + 431 none 96.85 445 94.43 0.0 Tubulin beta-1 chain OS Glycine max GN TUBB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPN9|TBB2_ELEIN 1 445 + 445 Gaps:1 99.11 448 92.79 0.0 Tubulin beta-2 chain OS Eleusine indica GN TUBB2 PE 2 SV 1
blastp_uniprot_sprot sp|P93176|TBB_HORVU 1 430 + 430 none 96.20 447 94.65 0.0 Tubulin beta chain OS Hordeum vulgare GN TUBB PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRB0|TBB3_WHEAT 1 430 + 430 none 96.63 445 93.72 0.0 Tubulin beta-3 chain OS Triticum aestivum GN TUBB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q43594|TBB1_ORYSJ 1 430 + 430 none 96.20 447 94.65 0.0 Tubulin beta-1 chain OS Oryza sativa subsp. japonica GN TUBB1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZPN7|TBB4_ELEIN 1 430 + 430 none 96.41 446 94.65 0.0 Tubulin beta-4 chain OS Eleusine indica GN TUBB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q41783|TBB6_MAIZE 1 430 + 430 none 96.41 446 94.42 0.0 Tubulin beta-6 chain OS Zea mays GN TUBB6 PE 2 SV 1
blastp_uniprot_sprot sp|P45960|TBB4_ORYSJ 1 430 + 430 none 96.20 447 94.42 0.0 Tubulin beta-4 chain OS Oryza sativa subsp. japonica GN TUBB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRB1|TBB2_WHEAT 1 430 + 430 none 96.20 447 94.42 0.0 Tubulin beta-2 chain OS Triticum aestivum GN TUBB2 PE 2 SV 1

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 47 244 198 SM00864 none Tubulin/FtsZ family, GTPase domain IPR003008
SUPERFAMILY 1 243 243 SSF52490 none none IPR003008
Coils 408 443 36 Coil none none none
ProSitePatterns 140 146 7 PS00227 none Tubulin subunits alpha, beta, and gamma signature. IPR017975
Gene3D 374 429 56 G3DSA:1.10.287.600 none none IPR023123
PRINTS 245 258 14 PR01163 none Beta-tubulin signature IPR002453
PRINTS 377 388 12 PR01163 none Beta-tubulin signature IPR002453
PRINTS 41 58 18 PR01163 none Beta-tubulin signature IPR002453
PRINTS 108 126 19 PR01163 none Beta-tubulin signature IPR002453
PRINTS 329 343 15 PR01163 none Beta-tubulin signature IPR002453
PRINTS 88 99 12 PR01163 none Beta-tubulin signature IPR002453
PRINTS 412 430 19 PR01163 none Beta-tubulin signature IPR002453
PRINTS 212 224 13 PR01163 none Beta-tubulin signature IPR002453
PRINTS 230 239 10 PR01163 none Beta-tubulin signature IPR002453
PRINTS 152 164 13 PR01163 none Beta-tubulin signature IPR002453
PRINTS 311 329 19 PR01163 none Beta-tubulin signature IPR002453
PRINTS 347 370 24 PR01163 none Beta-tubulin signature IPR002453
PRINTS 265 281 17 PR01163 none Beta-tubulin signature IPR002453
Pfam 261 382 122 PF03953 none Tubulin C-terminal domain IPR018316
Gene3D 1 263 263 G3DSA:3.40.50.1440 none none IPR003008
PANTHER 1 439 439 PTHR11588 none none IPR000217
PRINTS 151 172 22 PR01161 none Tubulin signature IPR000217
PRINTS 10 30 21 PR01161 none Tubulin signature IPR000217
PRINTS 93 104 12 PR01161 none Tubulin signature IPR000217
PRINTS 106 130 25 PR01161 none Tubulin signature IPR000217
PRINTS 176 189 14 PR01161 none Tubulin signature IPR000217
PRINTS 51 70 20 PR01161 none Tubulin signature IPR000217
PRINTS 132 150 19 PR01161 none Tubulin signature IPR000217
PRINTS 190 210 21 PR01161 none Tubulin signature IPR000217
PRINTS 370 398 29 PR01161 none Tubulin signature IPR000217

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting