Protein : Qrob_P0658550.2 Q. robur
Protein Identifier  ? Qrob_P0658550.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=1) K12667 - oligosaccharyltransferase complex subunit delta (ribophorin II) Code Enzyme  EC:2.4.99.18
Gene Prediction Quality  validated Protein length 

Sequence

Length: 708  
Kegg Orthology  K12667
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006487 protein N-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
GO:0008250 oligosaccharyltransferase complex A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002285mg 3 707 + 705 Gaps:18 99.57 692 77.65 0.0 hypothetical protein
blastp_kegg lcl|pmum:103334461 3 707 + 705 Gaps:18 99.57 692 77.50 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
blastp_kegg lcl|cic:CICLE_v10019124mg 1 707 + 707 Gaps:17 100.00 692 74.42 0.0 hypothetical protein
blastp_kegg lcl|cit:102609203 1 707 + 707 Gaps:17 100.00 692 74.42 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like
blastp_kegg lcl|cmo:103501715 1 707 + 707 Gaps:18 100.00 691 72.50 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
blastp_kegg lcl|pxb:103958868 4 707 + 704 Gaps:21 99.43 697 75.18 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like
blastp_kegg lcl|tcc:TCM_003993 1 697 + 697 Gaps:21 92.45 742 75.36 0.0 Ribophorin II (RPN2) family protein isoform 2
blastp_kegg lcl|pxb:103928776 4 707 + 704 Gaps:26 99.43 702 74.07 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like
blastp_kegg lcl|csv:101216794 1 707 + 707 Gaps:30 100.00 679 72.46 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like
blastp_kegg lcl|mdm:103435734 4 707 + 704 Gaps:23 99.43 699 73.96 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
blastp_uniprot_sprot sp|Q93Z16|RPN2_ARATH 8 707 + 700 Gaps:19 98.84 691 63.98 0.0 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Arabidopsis thaliana GN RPN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N7W3|RPN2_ORYSJ 8 707 + 700 Gaps:27 98.14 698 61.75 0.0 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Oryza sativa subsp. japonica GN RPN2 PE 2 SV 1
blastp_uniprot_sprot sp|P04844|RPN2_HUMAN 332 698 + 367 Gaps:36 53.09 631 33.43 9e-27 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Homo sapiens GN RPN2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5RBM1|RPN2_PONAB 5 698 + 694 Gaps:92 98.57 631 28.78 9e-27 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Pongo abelii GN RPN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9DBG6|RPN2_MOUSE 414 698 + 285 Gaps:27 41.52 631 35.50 8e-25 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Mus musculus GN Rpn2 PE 2 SV 1
blastp_uniprot_sprot sp|P25235|RPN2_RAT 388 698 + 311 Gaps:33 44.69 631 34.75 1e-24 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Rattus norvegicus GN Rpn2 PE 2 SV 2
blastp_uniprot_sprot sp|Q3SZI6|RPN2_BOVIN 307 698 + 392 Gaps:41 57.21 631 31.86 1e-23 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Bos taurus GN RPN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9GL01|RPN2_PIG 332 698 + 367 Gaps:43 52.78 629 32.83 1e-20 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS Sus scrofa GN RPN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54HG9|RPN2_DICDI 539 692 + 154 Gaps:13 20.58 685 38.30 4e-16 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit swp1 OS Dictyostelium discoideum GN swp1 PE 3 SV 1
rpsblast_cdd gnl|CDD|191377 5 701 + 697 Gaps:80 99.21 636 38.99 1e-169 pfam05817 Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II. This family contains eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides and is composed of the following proteins: ribophorins I and II (RI and RII) OST48 and Dadl N33/IAP OST4 STT3. The family also includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase complex is composed 7 or 8 subunits SWP1 being one of them.
rpsblast_kog gnl|CDD|37658 392 694 + 303 Gaps:28 97.21 287 42.65 3e-60 KOG2447 KOG2447 KOG2447 Oligosaccharyltransferase delta subunit (ribophorin II) [Posttranslational modification protein turnover chaperones].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 6 698 693 PTHR12640:SF0 "KEGG:00510+2.4.99.18","KEGG:00513+2.4.99.18","UniPathway:UPA00378";signature_desc=SUBFAMILY NOT NAMED none IPR008814
Phobius 646 666 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 672 694 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 635 645 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 667 671 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 610 634 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 5 15 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 6 698 693 PTHR12640 none none none
Pfam 6 701 696 PF05817 "KEGG:00510+2.4.99.18","KEGG:00513+2.4.99.18","UniPathway:UPA00378" Oligosaccharyltransferase subunit Ribophorin II IPR008814
Phobius 695 707 13 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 21 609 589 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

6 Localization

Analysis Start End Length
TMHMM 646 668 22
TMHMM 672 694 22
SignalP_EUK 1 20 19
TMHMM 612 634 22
TMHMM 5 27 22
SignalP_GRAM_POSITIVE 1 20 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting