Protein : Qrob_P0657860.2 Q. robur
Protein Identifier  ? Qrob_P0657860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K02950 - small subunit ribosomal protein S12 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
Kegg Orthology  K02950
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:s02071p00004290 2 129 + 128 Gaps:5 95.00 140 90.23 1e-76 AMTR_s02071p00004290 hypothetical protein
blastp_kegg lcl|csv:101207557 17 129 + 113 Gaps:14 100.00 127 85.83 4e-69 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|mtr:MTR_3g035660 17 124 + 108 Gaps:1 12.28 871 93.46 8e-59 NAD(P)H-quinone oxidoreductase subunit 2 A
blastp_kegg lcl|cam:101508960 18 127 + 110 Gaps:1 12.62 864 89.91 2e-58 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_002G050200g 41 129 + 89 none 96.74 92 100.00 2e-56 hypothetical protein
blastp_kegg lcl|gmx:100776305 41 139 + 99 none 58.58 169 89.90 7e-53 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100820917 36 129 + 94 none 100.00 94 88.30 2e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100839429 39 129 + 91 none 95.79 95 91.21 3e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100840772 39 129 + 91 none 97.85 93 91.21 4e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|vvi:100854829 41 129 + 89 none 77.39 115 93.26 1e-51 30S ribosomal protein S12-B chloroplastic-like
blastp_pdb 3bbn_L 50 126 + 77 none 62.60 123 100.00 5e-49 mol:protein length:123 Ribosomal Protein S12
blastp_pdb 3fic_L 50 126 + 77 none 61.60 125 84.42 4e-42 mol:protein length:125 30S ribosomal protein S12
blastp_pdb 3pyu_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pys_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pyq_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pyn_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3ms0_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3mr8_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3izz_F 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 Protein S12 (Small Subunit)
blastp_pdb 2r1g_H 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_uniprot_sprot sp|A4GYN8|RR12B_POPTR 41 126 + 86 none 63.70 135 98.84 3e-54 30S ribosomal protein S12-B chloroplastic OS Populus trichocarpa GN rps12-B PE 3 SV 1
blastp_uniprot_sprot sp|A4QJX7|RR12B_OLIPU 31 126 + 96 Gaps:2 79.03 124 84.69 5e-50 30S ribosomal protein S12-B chloroplastic OS Olimarabidopsis pumila GN rps12-B PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9J5|RR12_LIRTU 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Liriodendron tulipifera GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q332V3|RR12_LACSA 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Lactuca sativa GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXY0|RR12_HELAN 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Helianthus annuus GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|A4GGC9|RR12_PHAVU 50 126 + 77 none 62.60 123 100.00 1e-48 30S ribosomal protein S12 chloroplastic OS Phaseolus vulgaris GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q9B133|RR12_LOTJA 50 126 + 77 none 62.60 123 100.00 1e-48 30S ribosomal protein S12 chloroplastic OS Lotus japonicus GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|P46296|RR12_CUSEU 50 126 + 77 none 62.60 123 100.00 1e-48 Plastid 30S ribosomal protein S12 OS Cuscuta europaea GN rps12 PE 3 SV 1
blastp_uniprot_sprot sp|P07134|RR12_SOYBN 50 126 + 77 none 62.60 123 100.00 2e-48 30S ribosomal protein S12 chloroplastic OS Glycine max GN rps12-A PE 3 SV 2
blastp_uniprot_sprot sp|Q09FT7|RR12_NANDO 50 126 + 77 none 62.60 123 100.00 2e-48 30S ribosomal protein S12 chloroplastic OS Nandina domestica GN rps12-A PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 46 126 81 SSF50249 none none IPR012340
ProSitePatterns 54 61 8 PS00055 none Ribosomal protein S12 signature. IPR006032
PANTHER 50 126 77 PTHR11652 none none IPR006032
Pfam 34 126 93 PF00164 none Ribosomal protein S12/S23 IPR006032
PRINTS 69 88 20 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 105 121 17 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 53 68 16 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 88 105 18 PR01034 none Ribosomal protein S12 signature IPR005679
TIGRFAM 26 127 102 TIGR00981 none rpsL_bact: ribosomal protein uS12 IPR005679
Gene3D 30 126 97 G3DSA:2.40.50.140 none none IPR012340

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting