Protein : Qrob_P0657280.2 Q. robur
Protein Identifier  ? Qrob_P0657280.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=3) K02872 - large subunit ribosomal protein L13Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 188  
Kegg Orthology  K02872
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103497862 1 187 + 187 none 90.78 206 90.37 5e-121 60S ribosomal protein L13a-4
blastp_kegg lcl|cmo:103496971 1 187 + 187 none 90.78 206 90.37 5e-121 60S ribosomal protein L13a-4
blastp_kegg lcl|cmo:103492022 1 187 + 187 none 90.78 206 90.37 5e-121 60S ribosomal protein L13a-4
blastp_kegg lcl|csv:101214548 1 187 + 187 none 90.78 206 90.37 5e-121 60S ribosomal protein L13a-4-like
blastp_kegg lcl|csv:101213988 1 187 + 187 none 90.78 206 90.37 5e-121 60S ribosomal protein L13a-4-like
blastp_kegg lcl|cmo:103483483 1 187 + 187 none 90.78 206 89.84 1e-120 60S ribosomal protein L13a-2-like
blastp_kegg lcl|csv:101213484 1 187 + 187 none 90.78 206 89.84 1e-120 60S ribosomal protein L13a-2-like
blastp_kegg lcl|pxb:103940058 1 187 + 187 none 90.78 206 90.37 3e-120 60S ribosomal protein L13a-4-like
blastp_kegg lcl|mdm:103420727 1 187 + 187 none 90.78 206 90.37 3e-120 60S ribosomal protein L13a-4
blastp_kegg lcl|rcu:RCOM_1019840 1 187 + 187 none 90.78 206 90.37 3e-120 60S ribosomal protein L13a putative
blastp_pdb 3izr_K 1 187 + 187 none 90.78 206 80.21 3e-110 mol:protein length:206 60S ribosomal protein L13a (L13p)
blastp_pdb 2zkr_j 1 182 + 182 none 89.66 203 56.59 2e-69 mol:protein length:203 60S ribosomal protein L13a
blastp_pdb 3u5i_O 1 173 + 173 none 86.93 199 52.60 2e-60 mol:protein length:199 60S ribosomal protein L16-A 60S ribosomal pr
blastp_pdb 3u5e_O 1 173 + 173 none 86.93 199 52.60 2e-60 mol:protein length:199 60S ribosomal protein L16-A 60S ribosomal pr
blastp_pdb 3o5h_P 1 173 + 173 none 86.93 199 52.60 2e-60 mol:protein length:199 60S ribosomal protein L16-A
blastp_pdb 3o58_P 1 173 + 173 none 86.93 199 52.60 2e-60 mol:protein length:199 60S ribosomal protein L16-A
blastp_pdb 3izs_K 1 173 + 173 none 86.93 199 52.60 2e-60 mol:protein length:199 60S ribosomal protein rpL16 (L13p)
blastp_pdb 4a1e_I 1 157 + 157 none 79.29 198 52.23 2e-53 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_pdb 4a1c_I 1 157 + 157 none 79.29 198 52.23 2e-53 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_pdb 4a1a_I 1 157 + 157 none 79.29 198 52.23 2e-53 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_uniprot_sprot sp|Q9FKC0|R13A4_ARATH 1 187 + 187 none 90.78 206 83.96 1e-114 60S ribosomal protein L13a-4 OS Arabidopsis thaliana GN RPL13AD PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRX8|R13A2_ARATH 1 187 + 187 none 90.78 206 83.42 7e-114 60S ribosomal protein L13a-2 OS Arabidopsis thaliana GN RPL13AB PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVR0|R13A3_ARATH 1 187 + 187 none 90.78 206 82.35 2e-113 60S ribosomal protein L13a-3 OS Arabidopsis thaliana GN RPL13AC PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFU1|R13A1_ARATH 1 187 + 187 none 90.78 206 80.21 7e-113 60S ribosomal protein L13a-1 OS Arabidopsis thaliana GN RPL13AA PE 2 SV 1
blastp_uniprot_sprot sp|O49885|RL13A_LUPLU 1 187 + 187 Gaps:1 90.73 205 80.65 7e-109 60S ribosomal protein L13a OS Lupinus luteus GN RPL13A PE 2 SV 1
blastp_uniprot_sprot sp|O65055|RL13A_PICMA 1 187 + 187 none 90.78 206 74.87 3e-103 60S ribosomal protein L13a OS Picea mariana GN RPL13A PE 2 SV 1
blastp_uniprot_sprot sp|P93099|RL13A_CYAPA 1 164 + 164 none 82.00 200 64.63 1e-74 60S ribosomal protein L13a OS Cyanophora paradoxa PE 2 SV 1
blastp_uniprot_sprot sp|Q3SZ90|RL13A_BOVIN 1 182 + 182 none 89.66 203 58.24 3e-71 60S ribosomal protein L13a OS Bos taurus GN RPL13A PE 2 SV 3
blastp_uniprot_sprot sp|Q5RA38|RL13A_PONAB 1 182 + 182 none 89.66 203 57.69 8e-71 60S ribosomal protein L13a OS Pongo abelii GN RPL13A PE 2 SV 3
blastp_uniprot_sprot sp|P40429|RL13A_HUMAN 1 182 + 182 none 89.66 203 57.69 1e-70 60S ribosomal protein L13a OS Homo sapiens GN RPL13A PE 1 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 134 134 G3DSA:3.90.1180.10 none none IPR023564
Pfam 2 106 105 PF00572 none Ribosomal protein L13 IPR005822
TIGRFAM 1 134 134 TIGR01077 none L13_A_E: ribosomal protein uL13 IPR005755
PANTHER 1 187 187 PTHR11545:SF3 none none IPR005755
SUPERFAMILY 1 135 135 SSF52161 none none IPR023564
PANTHER 1 187 187 PTHR11545 none none IPR005822

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting