Protein : Qrob_P0653120.2 Q. robur
Protein Identifier  ? Qrob_P0653120.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14295 - nuclear pore complex protein Nup50 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 369  
Kegg Orthology  K14295
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046907 intracellular transport The directed movement of substances within a cell.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103938173 9 368 + 360 Gaps:55 82.32 492 55.31 4e-113 uncharacterized LOC103938173
blastp_kegg lcl|pop:POPTR_0001s08680g 9 368 + 360 Gaps:31 79.29 425 61.42 6e-113 POPTRDRAFT_751389 hypothetical protein
blastp_kegg lcl|pxb:103966473 9 368 + 360 Gaps:71 82.24 490 53.85 1e-109 uncharacterized LOC103966473
blastp_kegg lcl|pop:POPTR_0003s12090g 9 368 + 360 Gaps:18 80.54 442 59.55 5e-107 hypothetical protein
blastp_kegg lcl|mdm:103444751 9 368 + 360 Gaps:85 82.24 490 53.10 1e-105 uncharacterized protein DDB_G0274915
blastp_kegg lcl|tcc:TCM_016170 9 368 + 360 Gaps:60 80.27 446 56.98 2e-105 Pleckstrin domain superfamily protein isoform 1
blastp_kegg lcl|cic:CICLE_v10020090mg 9 368 + 360 Gaps:37 80.74 457 54.74 2e-102 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa005012mg 9 368 + 360 Gaps:79 87.11 481 50.84 1e-101 hypothetical protein
blastp_kegg lcl|cit:102609104 9 368 + 360 Gaps:53 81.24 469 53.54 3e-101 uncharacterized LOC102609104
blastp_kegg lcl|pmum:103337413 9 368 + 360 Gaps:95 83.14 516 49.88 2e-100 uncharacterized protein DDB_G0271670
blastp_pdb 2ec1_A 252 363 + 112 Gaps:15 82.40 125 34.95 4e-06 mol:protein length:125 Nucleoporin 50 kDa
blastp_uniprot_sprot sp|Q9JIH2|NUP50_MOUSE 224 363 + 140 Gaps:16 27.90 466 34.62 4e-07 Nuclear pore complex protein Nup50 OS Mus musculus GN Nup50 PE 1 SV 3
rpsblast_cdd gnl|CDD|176272 236 366 + 131 Gaps:18 99.18 122 33.88 1e-18 cd00835 RanBD Ran-binding domain. Ran-binding domain This domain of approximately 150 residues shares structural similarity to the PH domain but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
rpsblast_cdd gnl|CDD|197549 232 363 + 132 Gaps:12 95.38 130 28.23 5e-07 smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
rpsblast_kog gnl|CDD|37935 95 366 + 272 Gaps:30 54.62 487 25.19 2e-26 KOG2724 KOG2724 KOG2724 Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 239 364 126 G3DSA:2.30.29.30 none none IPR011993
Pfam 237 363 127 PF00638 none RanBP1 domain IPR000156
PANTHER 9 368 360 PTHR13118 none none none
ProSiteProfiles 239 368 130 PS50196 none Ran binding domain type 1 profile. IPR000156
SMART 229 364 136 SM00160 none Ran-binding domain IPR000156
SUPERFAMILY 239 365 127 SSF50729 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting