Protein : Qrob_P0653060.2 Q. robur
Protein Identifier  ? Qrob_P0653060.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11665 - DNA helicase INO80 [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1525  
Kegg Orthology  K11665
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0016817 hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0031011 Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250397 1 1524 + 1524 Gaps:45 100.00 1563 77.10 0.0 DNA helicase INO80-like
blastp_kegg lcl|pper:PRUPE_ppa000175mg 1 1501 + 1501 Gaps:33 99.87 1522 80.26 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s04280g 1 1507 + 1507 Gaps:39 99.67 1535 77.58 0.0 POPTRDRAFT_576236 transcriptional activator family protein
blastp_kegg lcl|pmum:103342429 1 1501 + 1501 Gaps:27 99.87 1516 80.71 0.0 DNA helicase INO80
blastp_kegg lcl|mdm:103447981 1 1501 + 1501 Gaps:34 99.87 1509 80.16 0.0 DNA helicase INO80-like
blastp_kegg lcl|cit:102628786 1 1509 + 1509 Gaps:35 100.00 1524 77.56 0.0 DNA helicase INO80-like
blastp_kegg lcl|tcc:TCM_024548 1 1512 + 1512 Gaps:43 99.41 1536 78.85 0.0 Chromatin remodeling complex subunit isoform 1
blastp_kegg lcl|fve:101305678 3 1497 + 1495 Gaps:35 99.80 1501 79.11 0.0 DNA helicase INO80-like
blastp_kegg lcl|mdm:103424084 1 1503 + 1503 Gaps:30 100.00 1513 78.59 0.0 DNA helicase INO80-like
blastp_kegg lcl|pxb:103954766 1 1503 + 1503 Gaps:30 100.00 1513 78.19 0.0 DNA helicase INO80
blastp_pdb 3mwy_W 561 1348 + 788 Gaps:22 61.00 800 41.80 7e-57 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z6a_A 565 1343 + 779 Gaps:41 88.40 500 35.97 3e-44 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 565 1343 + 779 Gaps:41 88.40 500 35.97 3e-44 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 565 1343 + 779 Gaps:41 88.40 500 35.97 3e-44 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z3i_X 538 1340 + 803 Gaps:38 76.86 644 31.11 8e-26 mol:protein length:644 similar to RAD54-like
blastp_pdb 1z5z_B 1191 1343 + 153 Gaps:11 56.83 271 36.36 1e-18 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 1191 1343 + 153 Gaps:11 56.83 271 36.36 1e-18 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_uniprot_sprot sp|Q8RXS6|INO80_ARATH 4 1491 + 1488 Gaps:48 98.87 1507 70.13 0.0 DNA helicase INO80 OS Arabidopsis thaliana GN INO80 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ULG1|INO80_HUMAN 332 1370 + 1039 Gaps:102 65.49 1556 47.30 0.0 DNA helicase INO80 OS Homo sapiens GN INO80 PE 1 SV 2
blastp_uniprot_sprot sp|Q6ZPV2|INO80_MOUSE 332 1387 + 1056 Gaps:114 66.32 1559 47.00 0.0 DNA helicase INO80 OS Mus musculus GN Ino80 PE 2 SV 2
blastp_uniprot_sprot sp|Q4PGL2|INO80_USTMA 351 1369 + 1019 Gaps:122 54.08 1910 45.69 0.0 Putative DNA helicase INO80 OS Ustilago maydis (strain 521 / FGSC 9021) GN INO80 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BGY8|INO80_DEBHA 336 1342 + 1007 Gaps:99 71.41 1364 44.97 0.0 Putative DNA helicase INO80 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN INO80 PE 3 SV 2
blastp_uniprot_sprot sp|O14148|INO80_SCHPO 351 1362 + 1012 Gaps:96 61.10 1604 45.20 0.0 Putative DNA helicase ino80 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ino80 PE 1 SV 4
blastp_uniprot_sprot sp|Q2UTQ9|INO80_ASPOR 351 1402 + 1052 Gaps:125 71.95 1444 44.66 0.0 Putative DNA helicase ino80 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN ino80 PE 3 SV 1
blastp_uniprot_sprot sp|Q1DUF9|INO80_COCIM 351 1371 + 1021 Gaps:108 60.95 1662 43.83 0.0 Putative DNA helicase INO80 OS Coccidioides immitis (strain RS) GN INO80 PE 3 SV 1
blastp_uniprot_sprot sp|A2R9H9|INO80_ASPNC 351 1371 + 1021 Gaps:149 59.87 1697 44.78 0.0 Putative DNA helicase ino80 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN ino80 PE 3 SV 1
blastp_uniprot_sprot sp|A7TJI3|INO80_VANPO 336 1353 + 1018 Gaps:123 63.17 1556 43.44 0.0 Putative DNA helicase INO80 OS Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN INO80 PE 3 SV 1
rpsblast_cdd gnl|CDD|201060 575 874 + 300 Gaps:13 100.00 301 44.85 2e-87 pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).
rpsblast_cdd gnl|CDD|178687 412 1346 + 935 Gaps:95 54.40 1033 43.42 1e-79 PLN03142 PLN03142 Probable chromatin-remodeling complex ATPase chain Provisional.
rpsblast_cdd gnl|CDD|30899 295 1340 + 1046 Gaps:55 91.69 866 28.72 1e-57 COG0553 HepA Superfamily II DNA/RNA helicases SNF2 family [Transcription / DNA replication recombination and repair].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 12 12 PTHR10799 none none none
SUPERFAMILY 556 800 245 SSF52540 none none IPR027417
ProSiteProfiles 584 755 172 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
ProSiteProfiles 337 462 126 PS51413 none DBINO domain profile. IPR020838
Pfam 575 874 300 PF00176 none SNF2 family N-terminal domain IPR000330
SUPERFAMILY 1184 1376 193 SSF52540 none none IPR027417
SUPERFAMILY 802 890 89 SSF52540 none none IPR027417
PANTHER 1179 1404 226 PTHR10799 none none none
Pfam 1227 1305 79 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 1188 1341 154 G3DSA:3.40.50.300 none none IPR027417
SMART 1222 1305 84 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 561 875 315 PTHR10799 none none none
PANTHER 561 875 315 PTHR10799:SF213 none none IPR031047
Gene3D 564 752 189 G3DSA:3.40.50.300 none none IPR027417
Pfam 343 464 122 PF13892 none DNA-binding domain IPR020838
PANTHER 330 527 198 PTHR10799:SF213 none none IPR031047
Coils 409 449 41 Coil none none none
SMART 568 763 196 SM00487 none DEAD-like helicases superfamily IPR014001
ProSiteProfiles 1196 1346 151 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 1179 1404 226 PTHR10799:SF213 none none IPR031047
PANTHER 1 12 12 PTHR10799:SF213 none none IPR031047
PANTHER 330 527 198 PTHR10799 none none none

0 Localization

0 Qtllist

0 Targeting