Protein : Qrob_P0650820.2 Q. robur
Protein Identifier  ? Qrob_P0650820.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) 1.17.1.2 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. Code Enzyme  EC:1.17.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 231  
Kegg Orthology  K03527
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
GO:0050992 dimethylallyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103420733 2 229 + 228 Gaps:19 53.70 460 76.52 2e-127 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0938310 2 229 + 228 Gaps:19 53.00 466 76.92 2e-127 4-hydroxy-3-methylbut-2-enyl diphosphate reductase putative (EC:1.17.1.2)
blastp_kegg lcl|gmx:100818067 2 230 + 229 Gaps:19 53.68 462 74.60 3e-127 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|sly:100316901 2 229 + 228 Gaps:19 53.58 461 75.71 6e-127 ISPH protein
blastp_kegg lcl|pop:POPTR_0009s11480g 2 229 + 228 Gaps:19 53.70 460 76.52 8e-127 POPTRDRAFT_557296 chloroplast biogenesis family protein
blastp_kegg lcl|pxb:103964132 2 229 + 228 Gaps:19 53.70 460 76.11 8e-127 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|pxb:103962553 2 229 + 228 Gaps:19 64.66 382 75.71 1e-126 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|mus:103993826 2 229 + 228 Gaps:19 54.29 455 74.90 2e-126 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|gmx:100805941 2 230 + 229 Gaps:19 53.68 462 74.19 2e-126 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|pmum:103335515 2 229 + 228 Gaps:19 53.58 461 75.30 4e-126 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_uniprot_sprot sp|Q94B35|ISPH_ARATH 2 229 + 228 Gaps:19 53.00 466 72.87 3e-123 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Arabidopsis thaliana GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|Q6AVG6|ISPH_ORYSJ 2 228 + 227 Gaps:19 53.59 459 73.98 2e-122 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Oryza sativa subsp. japonica GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|B8HWD3|ISPH_CYAP4 2 222 + 221 Gaps:27 57.78 405 59.40 2e-86 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q5N249|ISPH_SYNP6 2 222 + 221 Gaps:27 58.79 398 55.98 7e-83 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q31S64|ISPH_SYNE7 2 222 + 221 Gaps:27 58.79 398 55.98 7e-83 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus elongatus (strain PCC 7942) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|P58674|ISPH_NOSS1 2 227 + 226 Gaps:25 59.45 402 56.07 2e-82 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q3M8X6|ISPH_ANAVT 2 227 + 226 Gaps:25 59.45 402 55.65 4e-82 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B0C4N8|ISPH_ACAM1 2 226 + 225 Gaps:21 59.28 415 53.25 7e-81 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Acaryochloris marina (strain MBIC 11017) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B2IZV5|ISPH_NOSP7 2 227 + 226 Gaps:25 59.45 402 54.81 7e-80 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q8DK29|ISPH_THEEB 2 227 + 226 Gaps:27 59.45 402 57.32 2e-79 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Thermosynechococcus elongatus (strain BP-1) GN ispH PE 3 SV 1
rpsblast_cdd gnl|CDD|178416 2 229 + 228 Gaps:19 53.70 460 75.30 1e-119 PLN02821 PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase.
rpsblast_cdd gnl|CDD|184010 2 226 + 225 Gaps:25 61.50 387 58.82 8e-95 PRK13371 PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Provisional.
rpsblast_cdd gnl|CDD|190300 2 221 + 220 Gaps:61 64.64 280 34.81 8e-27 pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria plants and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
rpsblast_cdd gnl|CDD|161769 2 221 + 220 Gaps:63 63.93 280 37.99 1e-22 TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). The IspH protein (previously designated LytB) has now been recognized as the last enzyme in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3' 5'-bispyrophosphate synthetase I) which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
rpsblast_cdd gnl|CDD|31104 2 222 + 221 Gaps:60 62.24 294 33.33 8e-22 COG0761 LytB Penicillin tolerance protein [Lipid metabolism / Cell envelope biogenesis outer membrane].
rpsblast_cdd gnl|CDD|179212 88 227 + 140 Gaps:32 44.97 298 32.84 6e-12 PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Reviewed.
rpsblast_cdd gnl|CDD|178853 88 222 + 135 Gaps:32 19.32 647 34.40 1e-10 PRK00087 PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein Reviewed.
rpsblast_cdd gnl|CDD|183472 86 221 + 136 Gaps:28 44.84 281 27.78 9e-07 PRK12360 PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Provisional.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 2 218 217 PF02401 "KEGG:00900+1.17.1.2","MetaCyc:PWY-7560","UniPathway:UPA00056","UniPathway:UPA00059" LytB protein IPR003451
PANTHER 2 230 229 PTHR31619 none none none
PANTHER 2 230 229 PTHR31619:SF2 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting