Protein : Qrob_P0650730.2 Q. robur
Protein Identifier  ? Qrob_P0650730.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=4) PTHR10013 - GENERAL VESICULAR TRANSPORT FACTOR P115 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 918  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0048280 vesicle fusion with Golgi apparatus The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266995 1 917 + 917 Gaps:38 100.00 915 85.46 0.0 golgin candidate 6-like
blastp_kegg lcl|pop:POPTR_0001s35520g 1 917 + 917 Gaps:36 100.00 915 81.75 0.0 POPTRDRAFT_797875 vesicle tethering family protein
blastp_kegg lcl|pmum:103329782 1 917 + 917 Gaps:44 100.00 913 82.69 0.0 golgin candidate 6
blastp_kegg lcl|tcc:TCM_016988 1 909 + 909 Gaps:41 99.01 911 81.49 0.0 Golgin candidate 6 isoform 1
blastp_kegg lcl|cic:CICLE_v10014189mg 1 909 + 909 Gaps:40 99.12 913 80.77 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001083mg 1 917 + 917 Gaps:44 100.00 913 81.93 0.0 hypothetical protein
blastp_kegg lcl|mdm:103432024 1 917 + 917 Gaps:47 100.00 908 82.38 0.0 golgin candidate 6-like
blastp_kegg lcl|cit:102612836 1 909 + 909 Gaps:40 98.80 916 80.88 0.0 golgin candidate 6-like
blastp_kegg lcl|pxb:103960975 1 917 + 917 Gaps:47 100.00 908 82.27 0.0 golgin candidate 6-like
blastp_kegg lcl|rcu:RCOM_1065070 25 911 + 887 Gaps:36 97.15 911 80.56 0.0 vesicle docking protein P115 putative
blastp_pdb 3grl_A 14 689 + 676 Gaps:124 95.55 651 29.58 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_B 14 689 + 676 Gaps:124 95.55 651 29.58 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_A 14 689 + 676 Gaps:124 95.55 651 29.58 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 2w3c_A 137 689 + 553 Gaps:96 89.25 577 30.29 1e-45 mol:protein length:577 GENERAL VESICULAR TRANSPORT FACTOR P115
blastp_uniprot_sprot sp|B0F9L4|GOGC6_ARATH 1 904 + 904 Gaps:41 98.80 914 69.99 0.0 Golgin candidate 6 OS Arabidopsis thaliana GN GC6 PE 1 SV 2
blastp_uniprot_sprot sp|O60763|USO1_HUMAN 14 861 + 848 Gaps:149 84.72 962 27.36 2e-54 General vesicular transport factor p115 OS Homo sapiens GN USO1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9Z1Z0|USO1_MOUSE 14 797 + 784 Gaps:144 78.42 959 27.79 2e-52 General vesicular transport factor p115 OS Mus musculus GN Uso1 PE 1 SV 2
blastp_uniprot_sprot sp|P41541|USO1_BOVIN 14 797 + 784 Gaps:144 78.25 961 27.53 2e-52 General vesicular transport factor p115 OS Bos taurus GN USO1 PE 1 SV 1
blastp_uniprot_sprot sp|P41542|USO1_RAT 14 839 + 826 Gaps:153 82.69 959 27.36 6e-52 General vesicular transport factor p115 OS Rattus norvegicus GN Uso1 PE 1 SV 1
blastp_uniprot_sprot sp|P25386|USO1_YEAST 25 344 + 320 Gaps:48 19.11 1790 29.53 5e-25 Intracellular protein transport protein USO1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN USO1 PE 1 SV 2
blastp_uniprot_sprot sp|Q09857|USO1_SCHPO 25 585 + 561 Gaps:84 50.33 1067 25.88 6e-22 Intracellular protein transport protein uso1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN uso1 PE 3 SV 3
rpsblast_cdd gnl|CDD|147171 793 915 + 123 Gaps:13 100.00 136 46.32 4e-23 pfam04871 Uso1_p115_C Uso1 / p115 like vesicle tethering protein C terminal region. Also known as General vesicular transport factor Transcytosis associate protein (TAP) and Vesicle docking protein this myosin-shaped molecule consists of an N-terminal globular head region a coiled-coil tail which mediates dimerisation and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi) via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region and GM130 with another.
rpsblast_cdd gnl|CDD|191116 375 689 + 315 Gaps:70 89.29 308 29.09 6e-14 pfam04869 Uso1_p115_head Uso1 / p115 like vesicle tethering protein head region. Also known as General vesicular transport factor Transcytosis associated protein (TAP) and Vesicle docking protein this myosin-shaped molecule consists of an N-terminal globular head region a coiled-coil tail which mediates dimerisation and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi) via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of part of the head region. The head region is highly conserved but its function is unknown. It does not seem to be essential for vesicle tethering. The N-terminal part of the head region not within this family contains context-detected Armadillo/beta-catenin-like repeats (pfam00514).
rpsblast_kog gnl|CDD|36164 23 916 + 894 Gaps:149 85.05 970 28.48 2e-63 KOG0946 KOG0946 KOG0946 ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking secretion and vesicular transport].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 664 902 239 PTHR10013 none none IPR024095
PANTHER 106 641 536 PTHR10013 none none IPR024095
PANTHER 3 86 84 PTHR10013 none none IPR024095
Pfam 369 689 321 PF04869 none Uso1 / p115 like vesicle tethering protein, head region IPR006953
SUPERFAMILY 514 587 74 SSF48371 none none IPR016024
SUPERFAMILY 340 477 138 SSF48371 none none IPR016024
SUPERFAMILY 137 245 109 SSF48371 none none IPR016024
Gene3D 108 272 165 G3DSA:1.25.10.10 none none IPR011989
Pfam 793 915 123 PF04871 none Uso1 / p115 like vesicle tethering protein, C terminal region IPR006955
Coils 806 834 29 Coil none none none
Coils 771 799 29 Coil none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting