Protein : Qrob_P0641730.2 Q. robur
Protein Identifier  ? Qrob_P0641730.2 Organism . Name  Quercus robur
Score  88.1 Score Type  egn
Protein Description  (M=1) PTHR11760:SF9 - 40S RIBOSOMAL PROTEIN S3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 252  
Kegg Orthology  K02985
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0706760 1 248 + 248 Gaps:17 98.72 234 93.51 8e-153 40S ribosomal protein S3 putative
blastp_kegg lcl|gmx:100808705 1 251 + 251 Gaps:16 99.58 236 91.91 3e-152 40S ribosomal protein S3-3-like
blastp_kegg lcl|vvi:100261737 1 250 + 250 Gaps:17 99.57 234 93.13 7e-152 40S ribosomal protein S3-3-like
blastp_kegg lcl|pda:103705774 1 250 + 250 Gaps:16 99.57 235 91.45 1e-151 40S ribosomal protein S3-3-like
blastp_kegg lcl|pmum:103320627 1 251 + 251 Gaps:17 98.73 237 93.16 2e-151 40S ribosomal protein S3-2
blastp_kegg lcl|pop:POPTR_0015s08310g 1 248 + 248 Gaps:18 98.71 233 94.78 2e-151 POPTRDRAFT_835145 40S ribosomal protein S3
blastp_kegg lcl|pop:POPTR_0018s08510g 1 251 + 251 Gaps:17 100.00 234 92.74 5e-151 POPTRDRAFT_835769 40S ribosomal protein S3
blastp_kegg lcl|pop:POPTR_0006s23870g 1 248 + 248 Gaps:17 97.88 236 93.51 7e-151 POPTRDRAFT_832072 40S ribosomal protein S3
blastp_kegg lcl|gmx:100795045 1 248 + 248 Gaps:16 98.31 236 92.67 1e-150 40S ribosomal protein S3-3-like
blastp_kegg lcl|gmx:100799156 1 248 + 248 Gaps:17 98.73 236 93.13 1e-150 40S ribosomal protein S3-3-like
blastp_pdb 3iz6_B 1 241 + 241 Gaps:17 98.68 227 91.96 8e-144 mol:protein length:227 40S ribosomal protein S3 (S3p)
blastp_pdb 2zkq_c 1 232 + 232 Gaps:16 88.89 243 84.26 6e-126 mol:protein length:243 40S Ribosomal protein S3e
blastp_pdb 3u5g_D 1 244 + 244 Gaps:23 92.08 240 73.30 1e-105 mol:protein length:240 40S ribosomal protein S3
blastp_pdb 3u5c_D 1 244 + 244 Gaps:23 92.08 240 73.30 1e-105 mol:protein length:240 40S ribosomal protein S3
blastp_pdb 3o30_C 1 244 + 244 Gaps:23 92.08 240 73.30 1e-105 mol:protein length:240 40S ribosomal protein S3
blastp_pdb 3o2z_C 1 244 + 244 Gaps:23 92.08 240 73.30 1e-105 mol:protein length:240 40S ribosomal protein S3
blastp_pdb 3izb_B 1 244 + 244 Gaps:23 92.08 240 73.30 1e-105 mol:protein length:240 40S ribosomal protein rpS3 (S3p)
blastp_pdb 1s1h_C 5 207 + 203 Gaps:16 97.40 192 76.47 2e-98 mol:protein length:192 40S ribosomal protein S3
blastp_pdb 3jyv_C 6 207 + 202 Gaps:16 98.94 188 76.88 3e-98 mol:protein length:188 40S ribosomal protein S3
blastp_pdb 2xzn_C 5 231 + 227 Gaps:18 87.65 243 52.58 2e-75 mol:protein length:243 KH DOMAIN CONTAINING PROTEIN
blastp_uniprot_sprot sp|Q9FJA6|RS33_ARATH 1 235 + 235 Gaps:16 88.31 248 91.32 5e-143 40S ribosomal protein S3-3 OS Arabidopsis thaliana GN RPS3C PE 1 SV 1
blastp_uniprot_sprot sp|Q9SIP7|RS31_ARATH 1 248 + 248 Gaps:17 92.40 250 88.31 7e-143 40S ribosomal protein S3-1 OS Arabidopsis thaliana GN RPS3A PE 1 SV 1
blastp_uniprot_sprot sp|Q9M339|RS32_ARATH 1 233 + 233 Gaps:16 87.15 249 93.09 5e-142 40S ribosomal protein S3-2 OS Arabidopsis thaliana GN RPS3B PE 1 SV 1
blastp_uniprot_sprot sp|P02350|RS31_XENLA 1 232 + 232 Gaps:16 87.80 246 84.26 9e-126 40S ribosomal protein S3-A OS Xenopus laevis GN rps3-a PE 2 SV 2
blastp_uniprot_sprot sp|P47835|RS32_XENLA 1 232 + 232 Gaps:16 87.80 246 84.26 1e-125 40S ribosomal protein S3-B OS Xenopus laevis GN rps3-b PE 2 SV 1
blastp_uniprot_sprot sp|P62909|RS3_RAT 1 232 + 232 Gaps:16 88.89 243 84.26 2e-125 40S ribosomal protein S3 OS Rattus norvegicus GN Rps3 PE 1 SV 1
blastp_uniprot_sprot sp|P62908|RS3_MOUSE 1 232 + 232 Gaps:16 88.89 243 84.26 2e-125 40S ribosomal protein S3 OS Mus musculus GN Rps3 PE 1 SV 1
blastp_uniprot_sprot sp|E2RH47|RS3_CANFA 1 232 + 232 Gaps:16 88.89 243 84.26 2e-125 40S ribosomal protein S3 OS Canis familiaris GN RPS3 PE 1 SV 1
blastp_uniprot_sprot sp|Q0Z8U2|RS3_PIG 1 232 + 232 Gaps:16 88.89 243 84.26 2e-125 40S ribosomal protein S3 OS Sus scrofa GN RPS3 PE 2 SV 1
blastp_uniprot_sprot sp|P23396|RS3_HUMAN 1 232 + 232 Gaps:16 88.89 243 84.26 2e-125 40S ribosomal protein S3 OS Homo sapiens GN RPS3 PE 1 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 77 235 159 PTHR11760:SF9 none none none
Pfam 121 204 84 PF00189 none Ribosomal protein S3, C-terminal domain IPR001351
SUPERFAMILY 10 115 106 SSF54814 none none IPR009019
PANTHER 1 60 60 PTHR11760 none none none
Gene3D 109 209 101 G3DSA:3.30.1140.32 none none IPR001351
TIGRFAM 77 227 151 TIGR01008 none uS3_euk_arch: ribosomal protein uS3 IPR005703
SUPERFAMILY 109 207 99 SSF54821 none none IPR001351
ProSitePatterns 163 199 37 PS00548 none Ribosomal protein S3 signature. IPR018280
PANTHER 1 60 60 PTHR11760:SF9 none none none
PANTHER 77 235 159 PTHR11760 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting