Protein : Qrob_P0636880.2 Q. robur
Protein Identifier  ? Qrob_P0636880.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12585//PTHR12585:SF22 - SCC1 / RAD21 FAMILY MEMBER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 700  
Kegg Orthology  K06670
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0000228 nuclear chromosome A chromosome found in the nucleus of a eukaryotic cell.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256351 1 699 + 699 Gaps:70 100.00 761 55.98 0.0 sister chromatid cohesion 1 protein 3-like
blastp_kegg lcl|pmum:103330566 1 699 + 699 Gaps:67 100.00 724 59.67 0.0 sister chromatid cohesion 1 protein 3
blastp_kegg lcl|cit:102607852 1 697 + 697 Gaps:60 99.73 735 55.53 0.0 sister chromatid cohesion 1 protein 3-like
blastp_kegg lcl|rcu:RCOM_1526820 1 672 + 672 Gaps:80 95.09 774 53.12 0.0 cohesin subunit rad21 putative
blastp_kegg lcl|tcc:TCM_005931 1 697 + 697 Gaps:44 99.70 677 57.48 0.0 Cohesin subunit rad21 putative isoform 1
blastp_kegg lcl|pper:PRUPE_ppa019289mg 1 667 + 667 Gaps:57 100.00 690 59.13 0.0 hypothetical protein
blastp_kegg lcl|mdm:103413433 1 699 + 699 Gaps:99 100.00 706 54.53 0.0 sister chromatid cohesion 1 protein 3-like
blastp_kegg lcl|pop:POPTR_0001s23280g 1 668 + 668 Gaps:128 93.89 818 48.96 0.0 POPTRDRAFT_751597 Sister chromatid cohesion 1 protein 3
blastp_kegg lcl|pxb:103954897 1 699 + 699 Gaps:103 100.00 732 50.55 0.0 sister chromatid cohesion 1 protein 3-like
blastp_kegg lcl|mdm:103438369 1 699 + 699 Gaps:121 100.00 730 51.51 0.0 sister chromatid cohesion 1 protein 3-like
blastp_uniprot_sprot sp|Q9FQ19|SCC13_ARATH 1 698 + 698 Gaps:72 99.86 693 44.08 9e-145 Sister chromatid cohesion 1 protein 3 OS Arabidopsis thaliana GN SYN3 PE 2 SV 2
blastp_uniprot_sprot sp|O60216|RAD21_HUMAN 1 406 + 406 Gaps:84 57.69 631 34.62 4e-30 Double-strand-break repair protein rad21 homolog OS Homo sapiens GN RAD21 PE 1 SV 2
blastp_uniprot_sprot sp|Q3SWX9|RAD21_BOVIN 1 406 + 406 Gaps:82 57.78 630 34.62 5e-30 Double-strand-break repair protein rad21 homolog OS Bos taurus GN RAD21 PE 2 SV 1
blastp_uniprot_sprot sp|Q61550|RAD21_MOUSE 1 406 + 406 Gaps:84 57.32 635 34.34 2e-29 Double-strand-break repair protein rad21 homolog OS Mus musculus GN Rad21 PE 1 SV 3
blastp_uniprot_sprot sp|O93310|RAD21_XENLA 1 406 + 406 Gaps:68 57.55 629 33.15 2e-28 Double-strand-break repair protein rad21 homolog OS Xenopus laevis GN rad21 PE 1 SV 1
blastp_uniprot_sprot sp|A2AU37|RD21L_MOUSE 1 216 + 216 Gaps:16 40.58 552 35.27 6e-27 Double-strand-break repair protein rad21-like protein 1 OS Mus musculus GN Rad21l1 PE 1 SV 2
blastp_uniprot_sprot sp|D2HSB3|RD21L_AILME 1 122 + 122 Gaps:1 22.20 554 43.09 4e-26 Double-strand-break repair protein rad21-like protein 1 OS Ailuropoda melanoleuca GN RAD21L1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9H4I0|RD21L_HUMAN 1 122 + 122 Gaps:1 22.12 556 42.28 9e-26 Double-strand-break repair protein rad21-like protein 1 OS Homo sapiens GN RAD21L1 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FQ20|SCC12_ARATH 1 688 + 688 Gaps:61 63.33 810 31.58 1e-25 Sister chromatid cohesion 1 protein 2 OS Arabidopsis thaliana GN SYN2 PE 2 SV 2
blastp_uniprot_sprot sp|P30776|RAD21_SCHPO 1 116 + 116 Gaps:14 20.70 628 44.62 2e-21 Cohesin subunit rad21 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rad21 PE 1 SV 1
rpsblast_cdd gnl|CDD|203097 1 111 + 111 Gaps:1 100.00 110 52.73 1e-38 pfam04825 Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein. This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21 Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation.
rpsblast_cdd gnl|CDD|113590 642 694 + 53 none 96.36 55 50.94 1e-13 pfam04824 Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein. This family represents a conserved region found in eukaryotic cohesins of the Rad21 Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation.
rpsblast_kog gnl|CDD|36427 1 694 + 694 Gaps:119 99.19 614 29.72 3e-62 KOG1213 KOG1213 KOG1213 Sister chromatid cohesion complex Cohesin subunit RAD21/SCC1 [Cell cycle control cell division chromosome partitioning].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 565 564 PTHR12585:SF22 none none none
Pfam 643 694 52 PF04824 none Conserved region of Rad21 / Rec8 like protein IPR006909
PANTHER 589 699 111 PTHR12585:SF22 none none none
PANTHER 2 565 564 PTHR12585 none none none
PANTHER 589 699 111 PTHR12585 none none none
Gene3D 620 696 77 G3DSA:1.10.10.580 none none IPR023093
SUPERFAMILY 620 694 75 SSF46785 none none none
Pfam 1 111 111 PF04825 none N terminus of Rad21 / Rec8 like protein IPR006910

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting