Protein : Qrob_P0636470.2 Q. robur
Protein Identifier  ? Qrob_P0636470.2 Organism . Name  Quercus robur
Protein Description  (M=3) PF02362//PF06507 - B3 DNA binding domain // Auxin response factor Alias (in v1)  Qrob_P0871780.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 601  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003136mg 15 600 + 586 Gaps:29 96.50 600 72.19 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332948 17 600 + 584 Gaps:32 96.19 603 71.90 0.0 auxin response factor 17
blastp_kegg lcl|rcu:RCOM_1033160 1 600 + 600 Gaps:47 100.00 603 68.49 0.0 Auxin response factor putative
blastp_kegg lcl|pop:POPTR_0002s09050g 14 599 + 586 Gaps:33 98.48 594 67.69 0.0 POPTRDRAFT_754650 hypothetical protein
blastp_kegg lcl|mdm:103410897 1 600 + 600 Gaps:27 100.00 593 66.61 0.0 auxin response factor 17-like
blastp_kegg lcl|pop:POPTR_0005s16320g 14 598 + 585 Gaps:29 98.65 592 68.84 0.0 POPTRDRAFT_818500 hypothetical protein
blastp_kegg lcl|pxb:103956998 1 600 + 600 Gaps:25 100.00 597 67.34 0.0 auxin response factor 17
blastp_kegg lcl|pxb:103936134 10 600 + 591 Gaps:23 99.83 587 67.75 0.0 auxin response factor 17-like
blastp_kegg lcl|pxb:103956717 10 600 + 591 Gaps:23 99.83 587 67.75 0.0 auxin response factor 17-like
blastp_kegg lcl|mdm:103401869 10 600 + 591 Gaps:23 99.83 587 67.06 0.0 auxin response factor 17
blastp_pdb 1wid_A 126 223 + 98 Gaps:2 76.92 130 36.00 4e-12 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q84WU6|ARFQ_ARATH 15 560 + 546 Gaps:22 92.31 585 54.07 0.0 Auxin response factor 17 OS Arabidopsis thaliana GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|Q93YR9|ARFP_ARATH 8 461 + 454 Gaps:22 67.76 670 49.56 1e-127 Auxin response factor 16 OS Arabidopsis thaliana GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AV47|ARFV_ORYSJ 14 546 + 533 Gaps:76 77.51 698 45.10 2e-125 Auxin response factor 22 OS Oryza sativa subsp. japonica GN ARF22 PE 2 SV 1
blastp_uniprot_sprot sp|Q653H7|ARFR_ORYSJ 17 457 + 441 Gaps:27 64.29 700 49.33 6e-124 Auxin response factor 18 OS Oryza sativa subsp. japonica GN ARF18 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN5|ARFJ_ARATH 15 451 + 437 Gaps:45 64.36 693 49.55 1e-121 Auxin response factor 10 OS Arabidopsis thaliana GN ARF10 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K223|ARFH_ORYSJ 11 494 + 484 Gaps:60 71.66 681 48.98 6e-116 Auxin response factor 8 OS Oryza sativa subsp. japonica GN ARF8 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XKK6|ARFJ_ORYSJ 17 550 + 534 Gaps:42 76.97 699 43.31 2e-111 Auxin response factor 10 OS Oryza sativa subsp. japonica GN ARF10 PE 2 SV 3
blastp_uniprot_sprot sp|Q01I35|ARFJ_ORYSI 17 550 + 534 Gaps:42 76.97 699 43.31 2e-111 Auxin response factor 10 OS Oryza sativa subsp. indica GN ARF10 PE 3 SV 2
blastp_uniprot_sprot sp|Q7XSS9|ARFM_ORYSJ 17 452 + 436 Gaps:72 72.59 529 44.53 5e-75 Auxin response factor 13 OS Oryza sativa subsp. japonica GN ARF13 PE 2 SV 2
blastp_uniprot_sprot sp|Q2QQX6|ARFX_ORYSJ 17 511 + 495 Gaps:51 55.65 841 36.32 1e-66 Auxin response factor 24 OS Oryza sativa subsp. japonica GN ARF24 PE 2 SV 1
rpsblast_cdd gnl|CDD|191545 279 362 + 84 Gaps:1 100.00 83 44.58 7e-27 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 126 228 + 103 Gaps:6 100.00 97 37.11 9e-23 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 126 227 + 102 Gaps:6 100.00 96 36.46 8e-19 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 125 226 + 102 Gaps:7 98.98 98 29.90 6e-17 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 240 235 PTHR31384:SF6 none none none
PANTHER 268 512 245 PTHR31384:SF6 none none none
Pfam 126 227 102 PF02362 none B3 DNA binding domain IPR003340
SUPERFAMILY 120 244 125 SSF101936 none none IPR015300
ProSiteProfiles 126 228 103 PS50863 none B3 DNA-binding domain profile. IPR003340
Gene3D 117 229 113 G3DSA:2.40.330.10 none none IPR015300
SMART 126 228 103 SM01019 none B3 DNA binding domain IPR003340
PANTHER 6 240 235 PTHR31384 none none none
PANTHER 268 512 245 PTHR31384 none none none
Pfam 279 362 84 PF06507 none Auxin response factor IPR010525

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting