Protein : Qrob_P0635460.2 Q. robur
Protein Identifier  ? Qrob_P0635460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02958 - small subunit ribosomal protein S15e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 153  
Kegg Orthology  K02958
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103938165 1 152 + 152 none 100.00 152 98.03 6e-103 40S ribosomal protein S15-4-like
blastp_kegg lcl|pxb:103961350 1 152 + 152 none 100.00 152 98.03 6e-103 40S ribosomal protein S15-4-like
blastp_kegg lcl|mdm:103453331 1 152 + 152 none 100.00 152 98.03 6e-103 40S ribosomal protein S15-4-like
blastp_kegg lcl|pmum:103324162 1 152 + 152 none 100.00 152 98.03 6e-103 40S ribosomal protein S15-4
blastp_kegg lcl|fve:101300184 1 152 + 152 none 100.00 152 98.03 6e-103 40S ribosomal protein S15-like isoform 1
blastp_kegg lcl|pop:POPTR_0002s04420g 1 152 + 152 none 100.00 152 97.37 3e-102 POPTRDRAFT_816102 hypothetical protein
blastp_kegg lcl|pxb:103954387 1 152 + 152 none 100.00 152 97.37 3e-102 40S ribosomal protein S15-4
blastp_kegg lcl|mdm:103425714 1 152 + 152 none 100.00 152 97.37 3e-102 40S ribosomal protein S15-4
blastp_kegg lcl|mdm:103408664 1 152 + 152 none 100.00 152 97.37 3e-102 40S ribosomal protein S15-4
blastp_kegg lcl|mdm:103451032 1 152 + 152 none 100.00 152 97.37 3e-102 40S ribosomal protein S15-4
blastp_pdb 3iz6_R 1 152 + 152 Gaps:2 100.00 154 89.61 7e-97 mol:protein length:154 40S ribosomal protein S15 (S19p)
blastp_pdb 2zkq_s 1 152 + 152 Gaps:7 100.00 145 76.55 6e-70 mol:protein length:145 40S Ribosomal protein S15e
blastp_pdb 3u5g_P 15 152 + 138 Gaps:3 95.07 142 68.89 4e-63 mol:protein length:142 40S ribosomal protein S15
blastp_pdb 3u5c_P 15 152 + 138 Gaps:3 95.07 142 68.89 4e-63 mol:protein length:142 40S ribosomal protein S15
blastp_pdb 3o30_I 15 152 + 138 Gaps:3 95.07 142 68.89 4e-63 mol:protein length:142 40S ribosomal protein S15
blastp_pdb 3o2z_I 15 152 + 138 Gaps:3 95.07 142 68.89 4e-63 mol:protein length:142 40S ribosomal protein S15
blastp_pdb 3izb_R 15 152 + 138 Gaps:3 95.07 142 68.89 4e-63 mol:protein length:142 40S ribosomal protein rpS15 (S19p)
blastp_pdb 2xzn_S 16 135 + 120 Gaps:9 89.58 144 48.06 7e-40 mol:protein length:144 RPS15E
blastp_pdb 2xzm_S 16 135 + 120 Gaps:9 89.58 144 48.06 7e-40 mol:protein length:144 RPS15E
blastp_pdb 3j0q_S 22 137 + 116 Gaps:9 100.00 125 48.00 6e-39 mol:protein length:125 Ribosomal protein S15
blastp_uniprot_sprot sp|P31674|RS15_ORYSJ 1 152 + 152 Gaps:2 100.00 154 89.61 2e-96 40S ribosomal protein S15 OS Oryza sativa subsp. japonica GN RPS15 PE 2 SV 2
blastp_uniprot_sprot sp|Q945U1|RS15_ELAOL 1 152 + 152 Gaps:1 100.00 153 90.85 2e-95 40S ribosomal protein S15 OS Elaeis oleifera GN RPS15 PE 2 SV 1
blastp_uniprot_sprot sp|O65059|RS15_PICMA 1 152 + 152 Gaps:1 100.00 151 90.73 1e-94 40S ribosomal protein S15 OS Picea mariana GN RPS15 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FY64|RS154_ARATH 1 152 + 152 none 100.00 152 91.45 6e-91 40S ribosomal protein S15-4 OS Arabidopsis thaliana GN RPS15D PE 2 SV 1
blastp_uniprot_sprot sp|Q08112|RS151_ARATH 1 152 + 152 none 100.00 152 91.45 9e-91 40S ribosomal protein S15-1 OS Arabidopsis thaliana GN RPS15A PE 2 SV 1
blastp_uniprot_sprot sp|Q9FY65|RS153_ARATH 1 152 + 152 Gaps:2 100.00 150 89.33 3e-90 40S ribosomal protein S15-3 OS Arabidopsis thaliana GN RPS15C PE 2 SV 1
blastp_uniprot_sprot sp|Q9FY66|RS152_ARATH 1 152 + 152 none 100.00 152 82.89 9e-88 40S ribosomal protein S15-2 OS Arabidopsis thaliana GN RPS15B PE 2 SV 1
blastp_uniprot_sprot sp|Q9FIX6|RS155_ARATH 4 152 + 149 none 100.00 149 85.91 2e-80 40S ribosomal protein S15-5 OS Arabidopsis thaliana GN RPS15E PE 3 SV 1
blastp_uniprot_sprot sp|P34737|RS15_PODAS 1 152 + 152 none 100.00 152 75.00 4e-80 40S ribosomal protein S15 OS Podospora anserina GN RPS15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9UTQ6|RS15B_SCHPO 1 152 + 152 Gaps:2 100.00 154 68.18 2e-70 40S ribosomal protein S15-B OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rps15b PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 53 145 93 G3DSA:3.30.860.10 none none IPR023575
PANTHER 1 152 152 PTHR11880 none none IPR002222
PIRSF 9 152 144 PIRSF002144 none none IPR002222
SUPERFAMILY 56 136 81 SSF54570 none none IPR023575
PRINTS 117 132 16 PR00975 none Ribosomal protein S19 family signature IPR002222
PRINTS 85 104 20 PR00975 none Ribosomal protein S19 family signature IPR002222
PRINTS 105 117 13 PR00975 none Ribosomal protein S19 family signature IPR002222
TIGRFAM 19 152 134 TIGR01025 none uS19_arch: ribosomal protein uS19 IPR005713
Pfam 54 135 82 PF00203 none Ribosomal protein S19 IPR002222
ProSitePatterns 105 129 25 PS00323 none Ribosomal protein S19 signature. IPR020934

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting