Protein : Qrob_P0632720.2 Q. robur
Protein Identifier  ? Qrob_P0632720.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12813 - pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 360  
Kegg Orthology  K12813
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|obr:102701847 1 324 + 324 Gaps:1 30.89 1052 82.15 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
blastp_kegg lcl|bdi:100834233 1 324 + 324 Gaps:1 30.92 1051 81.85 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
blastp_kegg lcl|pda:103695951 1 324 + 324 Gaps:1 31.04 1047 82.15 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
blastp_kegg lcl|mdm:103409765 1 324 + 324 Gaps:1 78.50 414 82.46 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
blastp_kegg lcl|sita:101762541 1 324 + 324 Gaps:1 30.92 1051 80.00 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
blastp_kegg lcl|sbi:SORBI_03g010540 1 324 + 324 Gaps:1 31.07 1046 79.69 0.0 SORBIDRAFT_03g010540 Sb03g010540 hypothetical protein
blastp_kegg lcl|zma:100383864 10 324 + 315 Gaps:1 94.33 335 79.75 0.0 uncharacterized LOC100383864
blastp_kegg lcl|atr:s00110p00073830 1 324 + 324 Gaps:1 31.13 1044 80.62 0.0 AMTR_s00110p00073830 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10006650mg 1 324 + 324 Gaps:1 31.43 1034 78.46 0.0 hypothetical protein
blastp_kegg lcl|sly:101265017 1 324 + 324 Gaps:1 30.95 1050 84.00 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
blastp_pdb 3kx2_A 2 321 + 320 Gaps:17 42.63 767 48.93 2e-88 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 2 321 + 320 Gaps:17 42.63 767 48.93 2e-88 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 2 321 + 320 Gaps:17 42.30 773 48.93 2e-88 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 2 321 + 320 Gaps:17 42.30 773 48.93 2e-88 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 90 322 + 233 Gaps:2 85.56 270 49.78 6e-76 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|Q7YR39|DHX16_PANTR 2 324 + 323 Gaps:3 30.84 1044 64.91 2e-143 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Pan troglodytes GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 2 324 + 323 Gaps:3 30.93 1041 64.91 2e-143 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2
blastp_uniprot_sprot sp|Q767K6|DHX16_PIG 2 324 + 323 Gaps:3 30.81 1045 64.91 3e-143 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Sus scrofa GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|Q54MH3|DHX16_DICDI 2 324 + 323 Gaps:4 29.20 1106 62.85 2e-138 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Dictyostelium discoideum GN dhx16 PE 3 SV 1
blastp_uniprot_sprot sp|O45244|DHX16_CAEEL 3 322 + 320 Gaps:3 31.65 1008 58.93 5e-128 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS Caenorhabditis elegans GN mog-4 PE 1 SV 2
blastp_uniprot_sprot sp|Q10752|CDC28_SCHPO 4 322 + 319 Gaps:4 30.43 1055 58.88 3e-127 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cdc28 PE 3 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 2 322 + 321 Gaps:3 27.59 1160 51.88 1e-110 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 4 322 + 319 Gaps:3 27.23 1168 50.94 6e-110 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 2 322 + 321 Gaps:3 26.23 1220 52.81 2e-109 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 2 322 + 321 Gaps:3 25.72 1244 52.81 2e-109 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
rpsblast_cdd gnl|CDD|31829 2 318 + 317 Gaps:47 43.08 845 31.32 4e-69 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 1 322 + 322 Gaps:18 25.57 1283 34.15 6e-53 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 4 326 + 323 Gaps:37 27.05 1294 32.29 4e-44 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|190974 94 186 + 93 Gaps:2 100.00 91 56.04 3e-28 pfam04408 HA2 Helicase associated domain (HA2). This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown however it seems likely to be involved in nucleic acid binding.
rpsblast_cdd gnl|CDD|191824 220 319 + 100 Gaps:8 99.08 109 48.15 1e-26 pfam07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold. This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 220 319 100 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
PANTHER 1 324 324 PTHR18934:SF83 none none none
SUPERFAMILY 4 226 223 SSF52540 none none IPR027417
Pfam 94 186 93 PF04408 none Helicase associated domain (HA2) IPR007502
PANTHER 1 324 324 PTHR18934 none none none
SMART 94 186 93 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting