Protein : Qrob_P0632110.2 Q. robur
Protein Identifier  ? Qrob_P0632110.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K03006 - DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1868  
Kegg Orthology  K03006
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0005665 DNA-directed RNA polymerase II, core complex RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
GO:0006366 transcription from RNA polymerase II promoter The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264310 1 1776 + 1776 Gaps:202 99.95 1848 85.44 0.0 DNA-directed RNA polymerase II subunit RPB1-like
blastp_kegg lcl|cic:CICLE_v10024686mg 1 1799 + 1799 Gaps:260 99.03 1860 84.80 0.0 hypothetical protein
blastp_kegg lcl|cit:102617026 1 1799 + 1799 Gaps:260 99.03 1860 84.80 0.0 DNA-directed RNA polymerase II subunit 1-like
blastp_kegg lcl|fve:101311314 1 1797 + 1797 Gaps:305 99.46 1842 85.97 0.0 DNA-directed RNA polymerase II subunit RPB1-like
blastp_kegg lcl|pper:PRUPE_ppa000093mg 1 1776 + 1776 Gaps:87 92.68 1844 89.29 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929581 1 1776 + 1776 Gaps:80 95.11 1820 92.14 0.0 DNA-directed RNA polymerase II subunit 1-like
blastp_kegg lcl|pmum:103340377 1 1776 + 1776 Gaps:87 92.68 1844 89.12 0.0 DNA-directed RNA polymerase II subunit 1
blastp_kegg lcl|cmo:103490666 1 1797 + 1797 Gaps:254 99.18 1837 85.57 0.0 DNA-directed RNA polymerase II subunit 1
blastp_kegg lcl|csv:101228297 1 1797 + 1797 Gaps:230 99.24 1853 87.28 0.0 DNA-directed RNA polymerase II subunit RPB1-like
blastp_kegg lcl|mdm:103400553 1 1776 + 1776 Gaps:80 98.18 1763 91.80 0.0 DNA-directed RNA polymerase II subunit 1-like
blastp_pdb 3h0g_M 7 1596 + 1590 Gaps:72 90.07 1752 57.41 0.0 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 3h0g_A 7 1596 + 1590 Gaps:72 90.07 1752 57.41 0.0 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 4a93_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3m_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3l_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3k_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3j_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3i_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3g_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_pdb 4a3f_A 7 1555 + 1549 Gaps:53 89.49 1732 53.29 0.0 mol:protein length:1732 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
blastp_uniprot_sprot sp|P18616|NRPB1_ARATH 1 1797 + 1797 Gaps:342 98.80 1839 83.32 0.0 DNA-directed RNA polymerase II subunit 1 OS Arabidopsis thaliana GN NRPB1 PE 1 SV 3
blastp_uniprot_sprot sp|P35084|RPB1_DICDI 5 1589 + 1585 Gaps:89 90.79 1727 62.69 0.0 DNA-directed RNA polymerase II subunit rpb1 OS Dictyostelium discoideum GN polr2a PE 2 SV 2
blastp_uniprot_sprot sp|P04052|RPB1_DROME 8 1799 + 1792 Gaps:308 99.58 1887 54.50 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Drosophila melanogaster GN RpII215 PE 3 SV 4
blastp_uniprot_sprot sp|P08775|RPB1_MOUSE 15 1793 + 1779 Gaps:232 91.98 1970 57.51 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Mus musculus GN Polr2a PE 1 SV 3
blastp_uniprot_sprot sp|P24928|RPB1_HUMAN 15 1793 + 1779 Gaps:232 91.98 1970 57.56 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Homo sapiens GN POLR2A PE 1 SV 2
blastp_uniprot_sprot sp|P35074|RPB1_CAEBR 10 1799 + 1790 Gaps:173 97.46 1853 55.26 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Caenorhabditis briggsae GN rpb-1 PE 3 SV 2
blastp_uniprot_sprot sp|P36594|RPB1_SCHPO 7 1596 + 1590 Gaps:72 90.07 1752 57.41 0.0 DNA-directed RNA polymerase II subunit rpb1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q75A34|RPB1_ASHGO 5 1548 + 1544 Gaps:80 88.71 1745 53.62 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPB1 PE 3 SV 2
blastp_uniprot_sprot sp|P04050|RPB1_YEAST 7 1555 + 1549 Gaps:53 89.44 1733 53.29 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPO21 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SSC4|RPB1_ENCCU 10 1466 + 1457 Gaps:144 88.87 1599 48.14 0.0 DNA-directed RNA polymerase II subunit RPB1 OS Encephalitozoon cuniculi (strain GB-M1) GN RPB1 PE 3 SV 1

74 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 1675 1681 7 PS00115 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Eukaryotic RNA polymerase II heptapeptide repeat. IPR000684
ProSitePatterns 1668 1674 7 PS00115 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Eukaryotic RNA polymerase II heptapeptide repeat. IPR000684
Pfam 876 1060 185 PF04992 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1, domain 6 IPR007075
ProSitePatterns 1626 1632 7 PS00115 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Eukaryotic RNA polymerase II heptapeptide repeat. IPR000684
PANTHER 1590 1615 26 PTHR19376 none none none
ProSitePatterns 1703 1709 7 PS00115 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Eukaryotic RNA polymerase II heptapeptide repeat. IPR000684
Pfam 1669 1682 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1697 1710 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1599 1612 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1711 1724 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1676 1689 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1627 1640 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1751 1764 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1634 1647 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1536 1549 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1690 1703 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1606 1619 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1613 1626 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1655 1668 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1704 1717 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1521 1535 15 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1662 1675 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1641 1654 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1578 1591 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1592 1605 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1758 1771 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1564 1577 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1648 1661 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1765 1778 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684
Pfam 1550 1563 14 PF05001 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb1 C-terminal repeat IPR000684

0 Localization

0 Qtllist

0 Targeting