Protein : Qrob_P0626660.2 Q. robur
Protein Identifier  ? Qrob_P0626660.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K03681 - exosome complex component RRP40 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 181  
Kegg Orthology  K03681
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0000178 exosome (RNase complex) Complex of 3'-5' exoribonucleases.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100791930 1 170 + 170 Gaps:32 84.17 240 73.76 2e-98 putative exosome complex component rrp40-like
blastp_kegg lcl|pop:POPTR_0012s08180g 1 170 + 170 Gaps:32 83.47 242 73.76 3e-96 POPTRDRAFT_728586 exonuclease-related family protein
blastp_kegg lcl|pper:PRUPE_ppa010609mg 1 170 + 170 Gaps:32 83.13 243 72.28 1e-94 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_003G111100g 1 170 + 170 Gaps:32 84.17 240 71.78 1e-94 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G091200g 1 170 + 170 Gaps:32 84.17 240 71.78 2e-94 hypothetical protein
blastp_kegg lcl|pmum:103338342 1 170 + 170 Gaps:32 83.13 243 71.29 5e-93 putative exosome complex component rrp40
blastp_kegg lcl|vvi:100241656 1 170 + 170 Gaps:35 83.97 237 74.37 9e-93 putative exosome complex component rrp40-like
blastp_kegg lcl|mtr:MTR_5g043110 1 170 + 170 Gaps:32 84.17 240 70.30 1e-91 Exosome complex exonuclease RRP40
blastp_kegg lcl|rcu:RCOM_1510750 18 170 + 153 Gaps:7 68.38 234 83.75 1e-91 Exosome complex exonuclease RRP40 putative
blastp_kegg lcl|tcc:TCM_012055 1 170 + 170 Gaps:32 84.17 240 70.79 8e-91 PNAS-3 related isoform 1
blastp_pdb 2nn6_G 20 170 + 151 Gaps:15 56.75 289 39.02 1e-29 mol:protein length:289 Exosome complex exonuclease RRP40
blastp_pdb 2ja9_A 40 170 + 131 Gaps:2 76.00 175 31.58 1e-20 mol:protein length:175 EXOSOME COMPLEX EXONUCLEASE RRP40
blastp_pdb 2ba0_C 35 170 + 136 Gaps:8 57.64 229 28.03 1e-05 mol:protein length:229 Archeal exosome RNA binding protein RRP4
blastp_pdb 2ba0_B 35 170 + 136 Gaps:8 57.64 229 28.03 1e-05 mol:protein length:229 Archeal exosome RNA binding protein RRP4
blastp_pdb 2ba0_A 35 170 + 136 Gaps:8 57.64 229 28.03 1e-05 mol:protein length:229 Archeal exosome RNA binding protein RRP4
blastp_uniprot_sprot sp|Q7KWX9|EXOS3_DICDI 20 170 + 151 Gaps:9 66.67 237 43.04 7e-34 Putative exosome complex component rrp40 OS Dictyostelium discoideum GN exosc3 PE 3 SV 1
blastp_uniprot_sprot sp|Q7TQK4|EXOS3_MOUSE 20 170 + 151 Gaps:14 59.49 274 40.49 1e-30 Exosome complex component RRP40 OS Mus musculus GN Exosc3 PE 1 SV 3
blastp_uniprot_sprot sp|Q3T0E1|EXOS3_BOVIN 20 170 + 151 Gaps:15 59.64 275 40.24 8e-30 Exosome complex component RRP40 OS Bos taurus GN EXOSC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NQT5|EXOS3_HUMAN 20 170 + 151 Gaps:15 59.64 275 39.02 3e-29 Exosome complex component RRP40 OS Homo sapiens GN EXOSC3 PE 1 SV 3
blastp_uniprot_sprot sp|O13903|RRP40_SCHPO 20 170 + 151 Gaps:18 66.25 240 42.14 4e-28 Exosome complex component rrp40 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rrp40 PE 3 SV 1
blastp_uniprot_sprot sp|Q08285|RRP40_YEAST 40 170 + 131 Gaps:2 55.42 240 31.58 2e-19 Exosome complex component RRP40 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RRP40 PE 1 SV 2
rpsblast_cdd gnl|CDD|88465 40 124 + 85 none 98.84 86 58.82 1e-28 cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA rRNA and a number of small RNA species. In Saccharomyces cerevisiae the exosome includes nine core components six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4 Rrp40 and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure"..
rpsblast_cdd gnl|CDD|31294 28 170 + 143 Gaps:11 59.41 239 28.87 9e-20 COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|88420 40 113 + 74 Gaps:1 91.46 82 28.00 4e-10 cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein and Rrp40 and Csl4 proteins also represented in this group are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA rRNA and a number of small RNA species. In Saccharomyces cerevisiae the exosome includes nine core components six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4 Rrp40 and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure"..
rpsblast_cdd gnl|CDD|179758 40 170 + 131 Gaps:31 55.32 235 28.46 1e-08 PRK04163 PRK04163 exosome complex RNA-binding protein Rrp4 Provisional.
rpsblast_kog gnl|CDD|36222 20 170 + 151 Gaps:13 70.43 230 47.53 6e-44 KOG1004 KOG1004 KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation ribosomal structure and biogenesis].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 20 170 151 PTHR21321:SF3 none none none
SUPERFAMILY 39 130 92 SSF50249 none none IPR012340
PANTHER 20 170 151 PTHR21321 none none IPR026699
SUPERFAMILY 126 170 45 SSF54791 none none IPR004088

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting