Protein : Qrob_P0622220.2 Q. robur
Protein Identifier  ? Qrob_P0622220.2 Organism . Name  Quercus robur
Score  76.3 Score Type  egn
Protein Description  (M=2) K05956 - geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60] Code Enzyme  EC:2.5.1.60
Gene Prediction Quality  validated Protein length 

Sequence

Length: 456  
Kegg Orthology  K05956
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004663 Rab geranylgeranyltransferase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
GO:0018344 protein geranylgeranylation The covalent attachment of a geranylgeranyl group to a protein.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_044377 1 303 + 303 Gaps:2 96.83 315 86.89 0.0 RAB geranylgeranyl transferase beta subunit 1
blastp_kegg lcl|cmo:103499776 1 303 + 303 Gaps:2 96.21 317 86.89 0.0 geranylgeranyl transferase type-2 subunit beta
blastp_kegg lcl|csv:101203944 1 303 + 303 Gaps:2 96.21 317 86.56 0.0 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|vvi:100255737 1 327 + 327 Gaps:5 96.53 317 87.91 0.0 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|cam:101515449 1 303 + 303 Gaps:2 97.44 313 85.25 0.0 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|gmx:100793642 1 303 + 303 Gaps:2 96.21 317 84.92 0.0 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|pop:POPTR_0013s01400g 1 303 + 303 Gaps:2 97.44 313 84.26 0.0 POPTRDRAFT_806754 putative Rab geranylgeranyl transferase type II beta subunit family protein
blastp_kegg lcl|vvi:100253446 1 303 + 303 Gaps:2 96.21 317 85.25 0.0 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|eus:EUTSA_v10014116mg 1 303 + 303 Gaps:2 94.72 322 84.26 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10015999mg 1 303 + 303 Gaps:2 97.13 314 83.93 0.0 hypothetical protein
blastp_pdb 3hxf_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxe_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxd_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxc_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxb_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsx_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsw_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsv_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsu_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dst_B 4 303 + 300 Gaps:2 91.24 331 57.28 4e-131 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_uniprot_sprot sp|P53611|PGTB2_HUMAN 4 303 + 300 Gaps:2 91.24 331 57.95 2e-132 Geranylgeranyl transferase type-2 subunit beta OS Homo sapiens GN RABGGTB PE 1 SV 2
blastp_uniprot_sprot sp|Q5E9B3|PGTB2_BOVIN 4 303 + 300 Gaps:2 91.24 331 57.95 1e-131 Geranylgeranyl transferase type-2 subunit beta OS Bos taurus GN RABGGTB PE 2 SV 1
blastp_uniprot_sprot sp|Q08603|PGTB2_RAT 4 303 + 300 Gaps:2 91.24 331 57.28 1e-130 Geranylgeranyl transferase type-2 subunit beta OS Rattus norvegicus GN Rabggtb PE 1 SV 1
blastp_uniprot_sprot sp|P53612|PGTB2_MOUSE 4 303 + 300 Gaps:2 89.09 339 57.28 2e-130 Geranylgeranyl transferase type-2 subunit beta OS Mus musculus GN Rabggtb PE 1 SV 2
blastp_uniprot_sprot sp|B0G172|PGTB2_DICDI 4 299 + 296 Gaps:4 88.50 339 58.67 8e-120 Probable geranylgeranyl transferase type-2 subunit beta OS Dictyostelium discoideum GN rabggtb PE 3 SV 1
blastp_uniprot_sprot sp|P20133|PGTB2_YEAST 4 303 + 300 Gaps:9 95.08 325 53.07 2e-104 Geranylgeranyl transferase type-2 subunit beta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BET2 PE 1 SV 3
blastp_uniprot_sprot sp|P46960|PGTB2_SCHPO 1 303 + 303 Gaps:2 98.07 311 49.84 4e-104 Geranylgeranyl transferase type-2 subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ptb1 PE 3 SV 1
blastp_uniprot_sprot sp|P41992|GGTB2_CAEEL 4 299 + 296 Gaps:2 88.96 335 46.64 1e-96 Probable geranylgeranyl transferase type-2 subunit beta OS Caenorhabditis elegans GN ggtb-1 PE 3 SV 2
blastp_uniprot_sprot sp|O93830|PGTB2_CANAX 8 303 + 296 Gaps:22 92.67 341 48.10 4e-90 Geranylgeranyl transferase type-2 subunit beta OS Candida albicans GN BET2 PE 3 SV 1
blastp_uniprot_sprot sp|O13782|FNTB_SCHPO 7 287 + 281 Gaps:23 78.01 382 33.22 4e-41 Protein farnesyltransferase subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cpp1 PE 1 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 303 300 PTHR11774 none none none
PANTHER 4 303 300 PTHR11774:SF9 none none IPR026873
Gene3D 4 303 300 G3DSA:1.50.10.20 none none IPR008930
SUPERFAMILY 4 303 300 SSF48239 none none IPR008930
Pfam 146 189 44 PF00432 none Prenyltransferase and squalene oxidase repeat IPR001330
Pfam 109 140 32 PF00432 none Prenyltransferase and squalene oxidase repeat IPR001330
Pfam 242 285 44 PF00432 none Prenyltransferase and squalene oxidase repeat IPR001330
Pfam 53 93 41 PF00432 none Prenyltransferase and squalene oxidase repeat IPR001330
Pfam 194 237 44 PF00432 none Prenyltransferase and squalene oxidase repeat IPR001330

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting