Protein : Qrob_P0619610.2 Q. robur
Protein Identifier  ? Qrob_P0619610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF00098//PF03159 - Zinc knuckle // XRN 5'-3' exonuclease N-terminus Gene Prediction Quality  validated
Protein length 

Sequence

Length: 652  
Kegg Orthology  K12619
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0004527 exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO:0004534 5'-3' exoribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1597380 1 636 + 636 Gaps:36 54.45 1113 84.98 0.0 5'->3' exoribonuclease putative
blastp_kegg lcl|cit:102623051 1 636 + 636 Gaps:41 52.98 1123 85.04 0.0 5'-3' exoribonuclease 3-like
blastp_kegg lcl|cic:CICLE_v10000087mg 1 636 + 636 Gaps:41 53.12 1120 84.54 0.0 hypothetical protein
blastp_kegg lcl|gmx:100783068 1 646 + 646 Gaps:45 57.93 1065 83.14 0.0 5'-3' exoribonuclease 3-like
blastp_kegg lcl|vvi:100260845 1 636 + 636 Gaps:43 55.68 1065 86.00 0.0 5'-3' exoribonuclease 3-like
blastp_kegg lcl|gmx:100785683 1 646 + 646 Gaps:45 57.40 1075 82.66 0.0 5'-3' exoribonuclease 3-like
blastp_kegg lcl|csv:101206774 1 646 + 646 Gaps:56 56.86 1101 81.79 0.0 5'-3' exoribonuclease 3-like
blastp_kegg lcl|cmo:103503346 1 636 + 636 Gaps:48 54.82 1109 84.38 0.0 5'-3' exoribonuclease 3
blastp_kegg lcl|pvu:PHAVU_003G280400g 1 646 + 646 Gaps:45 58.37 1057 82.50 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_001G007900g 1 636 + 636 Gaps:38 56.04 1067 83.61 0.0 hypothetical protein
blastp_pdb 3fqd_A 1 635 + 635 Gaps:70 70.86 899 40.97 8e-140 mol:protein length:899 5'-3' exoribonuclease 2
blastp_pdb 3pif_D 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_C 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_B 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_A 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pie_D 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_C 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_B 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_A 1 428 + 428 Gaps:85 30.56 1155 49.29 7e-89 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 2y35_A 1 429 + 429 Gaps:84 30.79 1140 47.29 2e-82 mol:protein length:1140 LD22664P
blastp_uniprot_sprot sp|Q9FQ03|XRN3_ARATH 1 636 + 636 Gaps:55 57.55 1020 81.09 0.0 5'-3' exoribonuclease 3 OS Arabidopsis thaliana GN XRN3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FQ02|XRN2_ARATH 1 636 + 636 Gaps:61 57.21 1012 67.88 0.0 5'-3' exoribonuclease 2 OS Arabidopsis thaliana GN XRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FQ04|XRN4_ARATH 1 636 + 636 Gaps:35 52.06 947 70.59 0.0 5'-3' exoribonuclease 4 OS Arabidopsis thaliana GN XRN4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9DBR1|XRN2_MOUSE 1 635 + 635 Gaps:73 59.10 951 53.91 0.0 5'-3' exoribonuclease 2 OS Mus musculus GN Xrn2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9H0D6|XRN2_HUMAN 1 635 + 635 Gaps:83 59.16 950 53.91 0.0 5'-3' exoribonuclease 2 OS Homo sapiens GN XRN2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R4L5|XRN2_PONAB 1 635 + 635 Gaps:83 59.16 950 53.91 0.0 5'-3' exoribonuclease 2 OS Pongo abelii GN XRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9U299|XRN2_CAEEL 1 635 + 635 Gaps:71 60.31 975 48.98 1e-166 5'-3' exoribonuclease 2 homolog OS Caenorhabditis elegans GN xrn-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q60SG7|XRN2_CAEBR 1 635 + 635 Gaps:74 60.35 976 48.90 6e-165 5'-3' exoribonuclease 2 homolog OS Caenorhabditis briggsae GN xrn-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q4HWE2|XRN2_GIBZE 1 635 + 635 Gaps:56 62.76 980 45.85 7e-165 5'-3' exoribonuclease 2 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN RAT1 PE 3 SV 3
blastp_uniprot_sprot sp|Q8WZX5|XRN2_NEUCR 1 636 + 636 Gaps:60 59.14 1072 45.11 1e-164 5'-3' exoribonuclease 2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rat-1 PE 3 SV 3

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 283 297 15 PS50158 none Zinc finger CCHC-type profile. IPR001878
SUPERFAMILY 279 304 26 SSF57756 none none IPR001878
Coils 545 566 22 Coil none none none
SMART 283 299 17 SM00343 none zinc finger IPR001878
PANTHER 510 635 126 PTHR12341:SF30 none none none
PANTHER 148 448 301 PTHR12341 none none IPR027073
PANTHER 510 635 126 PTHR12341 none none IPR027073
PANTHER 43 125 83 PTHR12341 none none IPR027073
PANTHER 2 27 26 PTHR12341 none none IPR027073
Gene3D 279 304 26 G3DSA:4.10.60.10 none none IPR001878
PIRSF 1 636 636 PIRSF037239 none none IPR017151
PANTHER 148 448 301 PTHR12341:SF30 none none none
PANTHER 43 125 83 PTHR12341:SF30 none none none
PANTHER 2 27 26 PTHR12341:SF30 none none none
Pfam 283 297 15 PF00098 none Zinc knuckle IPR001878
Pfam 1 128 128 PF03159 none XRN 5'-3' exonuclease N-terminus IPR004859
Pfam 148 274 127 PF03159 none XRN 5'-3' exonuclease N-terminus IPR004859
Coils 429 450 22 Coil none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting