Protein : Qrob_P0619530.2 Q. robur
Protein Identifier  ? Qrob_P0619530.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR31384:SF10 - AUXIN RESPONSE FACTOR 5 (PTHR31384:SF10) Alias (in v1)  Qrob_P0333680.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 955  
Kegg Orthology  K14486
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321274 1 952 + 952 Gaps:16 99.58 954 76.21 0.0 auxin response factor 5
blastp_kegg lcl|pper:PRUPE_ppa000946mg 1 951 + 951 Gaps:16 99.58 953 75.34 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_034194 3 954 + 952 Gaps:26 99.68 951 75.32 0.0 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
blastp_kegg lcl|csv:101216825 1 952 + 952 Gaps:17 99.79 949 74.13 0.0 auxin response factor 5-like
blastp_kegg lcl|cmo:103503893 1 954 + 954 Gaps:17 100.00 949 73.66 0.0 auxin response factor 5
blastp_kegg lcl|cic:CICLE_v10000183mg 1 954 + 954 Gaps:20 100.00 946 74.52 0.0 hypothetical protein
blastp_kegg lcl|cit:102620437 1 954 + 954 Gaps:20 100.00 946 74.31 0.0 auxin response factor 5-like
blastp_kegg lcl|vvi:100254074 1 945 + 945 Gaps:40 99.35 925 75.30 0.0 auxin response factor 5-like
blastp_kegg lcl|pxb:103930094 1 952 + 952 Gaps:67 99.67 896 76.48 0.0 auxin response factor 5-like
blastp_kegg lcl|rcu:RCOM_1597120 1 954 + 954 Gaps:18 100.00 950 72.00 0.0 Auxin response factor putative
blastp_pdb 1wid_A 151 240 + 90 none 69.23 130 35.56 2e-09 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|P93024|ARFE_ARATH 1 941 + 941 Gaps:89 98.67 902 65.62 0.0 Auxin response factor 5 OS Arabidopsis thaliana GN ARF5 PE 1 SV 3
blastp_uniprot_sprot sp|Q8S983|ARFK_ORYSJ 1 937 + 937 Gaps:51 70.79 955 62.72 0.0 Auxin response factor 11 OS Oryza sativa subsp. japonica GN ARF11 PE 2 SV 1
blastp_uniprot_sprot sp|Q01K26|ARFK_ORYSI 1 937 + 937 Gaps:51 70.79 955 62.72 0.0 Auxin response factor 11 OS Oryza sativa subsp. indica GN ARF11 PE 3 SV 2
blastp_uniprot_sprot sp|Q6Z2W3|ARFE_ORYSJ 41 932 + 892 Gaps:52 56.48 1142 55.66 3e-162 Auxin response factor 5 OS Oryza sativa subsp. japonica GN ARF5 PE 2 SV 2
blastp_uniprot_sprot sp|Q2QM84|ARFY_ORYSJ 34 946 + 913 Gaps:4 53.62 899 63.90 4e-162 Auxin response factor 25 OS Oryza sativa subsp. japonica GN ARF25 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RYC8|ARFS_ARATH 41 950 + 910 Gaps:18 50.92 1086 62.57 8e-162 Auxin response factor 19 OS Arabidopsis thaliana GN ARF19 PE 1 SV 2
blastp_uniprot_sprot sp|Q0D9R7|ARFS_ORYSJ 45 938 + 894 Gaps:16 47.63 1161 60.94 1e-161 Auxin response factor 19 OS Oryza sativa subsp. japonica GN ARF19 PE 2 SV 2
blastp_uniprot_sprot sp|A2YG67|ARFQ_ORYSI 43 939 + 897 Gaps:5 50.49 917 65.44 2e-161 Auxin response factor 17 OS Oryza sativa subsp. indica GN ARF17 PE 3 SV 1
blastp_uniprot_sprot sp|Q653U3|ARFQ_ORYSJ 43 405 + 363 Gaps:4 39.80 917 67.40 2e-161 Auxin response factor 17 OS Oryza sativa subsp. japonica GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGV1|ARFH_ARATH 30 932 + 903 Gaps:6 58.32 811 63.85 5e-161 Auxin response factor 8 OS Arabidopsis thaliana GN ARF8 PE 2 SV 2
rpsblast_cdd gnl|CDD|191545 278 361 + 84 Gaps:1 100.00 83 62.65 8e-37 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202200 779 932 + 154 Gaps:26 92.55 188 28.16 5e-28 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|202217 152 254 + 103 Gaps:6 100.00 97 38.14 7e-24 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 152 253 + 102 Gaps:6 100.00 96 40.62 3e-22 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 151 252 + 102 Gaps:7 98.98 98 34.02 6e-20 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 152 253 102 PF02362 none B3 DNA binding domain IPR003340
ProSiteProfiles 840 924 85 PS51745 none PB1 domain profile. IPR000270
SUPERFAMILY 139 281 143 SSF101936 none none IPR015300
PANTHER 462 724 263 PTHR31384 none none none
PANTHER 751 941 191 PTHR31384 none none none
PANTHER 24 440 417 PTHR31384 none none none
SUPERFAMILY 858 918 61 SSF54277 none none none
PANTHER 462 724 263 PTHR31384:SF10 none none none
PANTHER 751 941 191 PTHR31384:SF10 none none none
PANTHER 24 440 417 PTHR31384:SF10 none none none
Pfam 278 361 84 PF06507 none Auxin response factor IPR010525
Pfam 834 929 96 PF02309 none AUX/IAA family IPR003311
ProSiteProfiles 152 254 103 PS50863 none B3 DNA-binding domain profile. IPR003340
SMART 152 254 103 SM01019 none B3 DNA binding domain IPR003340
Gene3D 146 266 121 G3DSA:2.40.330.10 none none IPR015300

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting