Protein : Qrob_P0613820.2 Q. robur
Protein Identifier  ? Qrob_P0613820.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) K17301 - coatomer, subunit beta Gene Prediction Quality  validated
Protein length 

Sequence

Length: 949  
Kegg Orthology  K17301
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
GO:0030126 COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_036827 1 948 + 948 none 100.00 948 94.20 0.0 Coatomer beta subunit isoform 1
blastp_kegg lcl|vvi:100242255 1 948 + 948 none 100.00 948 93.35 0.0 coatomer subunit beta-1-like
blastp_kegg lcl|cit:102624517 1 948 + 948 Gaps:10 100.00 958 92.17 0.0 coatomer subunit beta-1-like
blastp_kegg lcl|pxb:103960365 1 948 + 948 Gaps:1 100.00 947 92.40 0.0 coatomer subunit beta-1
blastp_kegg lcl|pxb:103966699 1 948 + 948 Gaps:1 100.00 947 91.34 0.0 coatomer subunit beta-1-like
blastp_kegg lcl|pop:POPTR_0018s03560g 1 948 + 948 Gaps:1 100.00 949 91.46 0.0 POPTRDRAFT_578384 putative coatmer beta subunit family protein
blastp_kegg lcl|pop:POPTR_0006s28810g 1 948 + 948 Gaps:1 100.00 949 91.04 0.0 putative coatmer beta subunit family protein
blastp_kegg lcl|mdm:103418346 1 948 + 948 Gaps:1 100.00 947 90.92 0.0 coatomer subunit beta-1
blastp_kegg lcl|fve:101300240 1 947 + 947 none 99.89 948 90.39 0.0 coatomer subunit beta-1-like
blastp_kegg lcl|mdm:103400620 1 948 + 948 Gaps:1 100.00 947 90.92 0.0 coatomer subunit beta-1-like
blastp_pdb 2vgl_B 21 460 + 440 Gaps:47 74.28 591 21.64 7e-13 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_E 21 460 + 440 Gaps:47 74.28 591 21.64 7e-13 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_B 21 460 + 440 Gaps:47 74.28 591 21.64 7e-13 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_E 21 460 + 440 Gaps:47 74.28 591 21.64 7e-13 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_B 21 460 + 440 Gaps:47 74.28 591 21.64 7e-13 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2xa7_B 21 460 + 440 Gaps:47 74.16 592 21.64 7e-13 mol:protein length:592 AP-2 COMPLEX SUBUNIT BETA
blastp_pdb 1w63_L 48 460 + 413 Gaps:65 70.55 584 22.57 7e-10 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_J 48 460 + 413 Gaps:65 70.55 584 22.57 7e-10 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_H 48 460 + 413 Gaps:65 70.55 584 22.57 7e-10 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_F 48 460 + 413 Gaps:65 70.55 584 22.57 7e-10 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_uniprot_sprot sp|Q9SV20|COPB2_ARATH 1 948 + 948 none 100.00 948 84.60 0.0 Coatomer subunit beta-2 OS Arabidopsis thaliana GN At4g31490 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SV21|COPB1_ARATH 1 948 + 948 none 100.00 948 84.49 0.0 Coatomer subunit beta-1 OS Arabidopsis thaliana GN At4g31480 PE 1 SV 2
blastp_uniprot_sprot sp|Q53PC7|COPB1_ORYSJ 1 948 + 948 Gaps:4 99.90 953 81.09 0.0 Coatomer subunit beta-1 OS Oryza sativa subsp. japonica GN Os11g0174000 PE 2 SV 1
blastp_uniprot_sprot sp|Q0JNK5|COPB2_ORYSJ 1 948 + 948 Gaps:4 100.00 950 80.21 0.0 Coatomer subunit beta-2 OS Oryza sativa subsp. japonica GN Os01g0281400 PE 3 SV 1
blastp_uniprot_sprot sp|P23514|COPB_RAT 2 948 + 947 Gaps:27 99.48 953 49.68 0.0 Coatomer subunit beta OS Rattus norvegicus GN Copb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JIF7|COPB_MOUSE 2 948 + 947 Gaps:27 99.48 953 49.68 0.0 Coatomer subunit beta OS Mus musculus GN Copb1 PE 1 SV 1
blastp_uniprot_sprot sp|A0JN39|COPB_BOVIN 2 948 + 947 Gaps:27 99.48 953 49.68 0.0 Coatomer subunit beta OS Bos taurus GN COPB1 PE 1 SV 1
blastp_uniprot_sprot sp|P53618|COPB_HUMAN 2 948 + 947 Gaps:27 99.48 953 49.68 0.0 Coatomer subunit beta OS Homo sapiens GN COPB1 PE 1 SV 3
blastp_uniprot_sprot sp|Q5ZIA5|COPB_CHICK 2 948 + 947 Gaps:27 99.48 953 49.89 0.0 Coatomer subunit beta OS Gallus gallus GN COPB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R922|COPB_PONAB 2 948 + 947 Gaps:27 99.48 953 49.58 0.0 Coatomer subunit beta OS Pongo abelii GN COPB1 PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 1 948 948 PIRSF005727 none none IPR016460
Pfam 18 466 449 PF01602 none Adaptin N terminal region IPR002553
Pfam 813 941 129 PF14806 none Coatomer beta subunit appendage platform IPR029446
Pfam 668 809 142 PF07718 "Reactome:REACT_11123" Coatomer beta C-terminal region IPR011710
Gene3D 19 480 462 G3DSA:1.25.10.10 none none IPR011989
Gene3D 553 658 106 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 13 478 466 SSF48371 none none IPR016024
SUPERFAMILY 551 638 88 SSF48371 none none IPR016024
PANTHER 1 948 948 PTHR10635 none none IPR016460

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting