Protein : Qrob_P0613720.2 Q. robur
Protein Identifier  ? Qrob_P0613720.2 Organism . Name  Quercus robur
Score  46.3 Score Type  egn
Protein Description  (M=2) K05956 - geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60] Code Enzyme  EC:2.5.1.60
Gene Prediction Quality  validated Protein length 

Sequence

Length: 212  
Kegg Orthology  K05956
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0004663 Rab geranylgeranyltransferase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
GO:0018344 protein geranylgeranylation The covalent attachment of a geranylgeranyl group to a protein.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100793642 9 188 + 180 Gaps:2 57.41 317 76.37 6e-95 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|vvi:100255737 9 168 + 160 Gaps:4 77.29 317 64.08 1e-92 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|vvi:100253446 9 168 + 160 Gaps:2 51.10 317 83.95 1e-92 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|cam:101515449 9 188 + 180 Gaps:2 58.15 313 74.73 2e-92 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|tcc:TCM_044377 9 168 + 160 Gaps:2 51.43 315 82.72 6e-92 RAB geranylgeranyl transferase beta subunit 1
blastp_kegg lcl|csv:101203944 9 168 + 160 Gaps:2 51.10 317 80.86 5e-91 geranylgeranyl transferase type-2 subunit beta-like
blastp_kegg lcl|pvu:PHAVU_002G235200g 9 188 + 180 Gaps:2 58.15 313 73.08 5e-91 hypothetical protein
blastp_kegg lcl|cmo:103499776 9 168 + 160 Gaps:2 51.10 317 80.25 4e-90 geranylgeranyl transferase type-2 subunit beta
blastp_kegg lcl|pop:POPTR_0013s01400g 9 168 + 160 Gaps:2 51.76 313 81.48 5e-90 POPTRDRAFT_806754 putative Rab geranylgeranyl transferase type II beta subunit family protein
blastp_kegg lcl|rcu:RCOM_0643780 9 168 + 160 Gaps:4 80.07 306 62.04 5e-89 geranylgeranyl transferase type II beta subunit putative (EC:2.5.1.60)
blastp_pdb 3hxf_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxe_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxd_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxc_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3hxb_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsx_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsw_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsv_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dsu_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_pdb 3dst_B 8 168 + 161 Gaps:12 75.83 331 47.01 4e-61 mol:protein length:331 Geranylgeranyl transferase type-2 subunit bet
blastp_uniprot_sprot sp|P53611|PGTB2_HUMAN 8 168 + 161 Gaps:12 75.83 331 47.41 2e-62 Geranylgeranyl transferase type-2 subunit beta OS Homo sapiens GN RABGGTB PE 1 SV 2
blastp_uniprot_sprot sp|Q5E9B3|PGTB2_BOVIN 8 168 + 161 Gaps:12 75.83 331 47.81 5e-62 Geranylgeranyl transferase type-2 subunit beta OS Bos taurus GN RABGGTB PE 2 SV 1
blastp_uniprot_sprot sp|Q08603|PGTB2_RAT 8 168 + 161 Gaps:12 75.83 331 47.01 1e-60 Geranylgeranyl transferase type-2 subunit beta OS Rattus norvegicus GN Rabggtb PE 1 SV 1
blastp_uniprot_sprot sp|P53612|PGTB2_MOUSE 8 168 + 161 Gaps:12 74.04 339 47.01 1e-60 Geranylgeranyl transferase type-2 subunit beta OS Mus musculus GN Rabggtb PE 1 SV 2
blastp_uniprot_sprot sp|B0G172|PGTB2_DICDI 7 189 + 183 Gaps:6 74.04 339 50.60 3e-56 Probable geranylgeranyl transferase type-2 subunit beta OS Dictyostelium discoideum GN rabggtb PE 3 SV 1
blastp_uniprot_sprot sp|P46960|PGTB2_SCHPO 10 167 + 158 Gaps:2 51.45 311 48.12 3e-41 Geranylgeranyl transferase type-2 subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ptb1 PE 3 SV 1
blastp_uniprot_sprot sp|P41992|GGTB2_CAEEL 9 197 + 189 Gaps:2 57.01 335 37.70 3e-41 Probable geranylgeranyl transferase type-2 subunit beta OS Caenorhabditis elegans GN ggtb-1 PE 3 SV 2
blastp_uniprot_sprot sp|P20133|PGTB2_YEAST 10 169 + 160 Gaps:12 80.00 325 41.15 3e-39 Geranylgeranyl transferase type-2 subunit beta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BET2 PE 1 SV 3
blastp_uniprot_sprot sp|O93830|PGTB2_CANAX 20 209 + 190 Gaps:28 87.98 341 35.67 8e-35 Geranylgeranyl transferase type-2 subunit beta OS Candida albicans GN BET2 PE 3 SV 1
blastp_uniprot_sprot sp|O13782|FNTB_SCHPO 17 167 + 151 Gaps:6 41.10 382 30.57 3e-16 Protein farnesyltransferase subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cpp1 PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 8 168 161 PTHR11774 none none none
SUPERFAMILY 7 171 165 SSF48239 none none IPR008930
Pfam 50 157 108 PF13249 none Prenyltransferase-like none
Gene3D 11 179 169 G3DSA:1.50.10.20 none none IPR008930
PANTHER 8 168 161 PTHR11774:SF9 none none IPR026873

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting