Protein : Qrob_P0613690.2 Q. robur
Protein Identifier  ? Qrob_P0613690.2 Organism . Name  Quercus robur
Protein Description  (M=3) PTHR31062:SF11 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 9 (PTHR31062:SF11) Alias (in v1)  Qrob_P1072100.1
Code Enzyme  EC:2.4.1.207 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 293  
Kegg Orthology  K08235
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s14860g 1 292 + 292 Gaps:1 99.66 294 82.59 0.0 POPTRDRAFT_571855 Xyloglucan endotransglucosylase/hydrolase protein 9 precursor
blastp_kegg lcl|pop:POPTR_0019s14590g 1 292 + 292 Gaps:1 98.99 296 82.59 0.0 POPTRDRAFT_915608 Xyloglucan endotransglucosylase/hydrolase protein 9 precursor
blastp_kegg lcl|pmum:103329427 1 292 + 292 Gaps:4 100.00 296 79.39 0.0 xyloglucan endotransglucosylase/hydrolase protein 9
blastp_kegg lcl|tcc:TCM_007818 1 292 + 292 Gaps:2 100.00 294 78.57 0.0 Xyloglucan endotransglucosylase/hydrolase 4 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa009350mg 5 292 + 288 none 97.30 296 80.21 0.0 hypothetical protein
blastp_kegg lcl|vvi:100248328 8 292 + 285 Gaps:1 95.95 296 82.75 8e-180 xyloglucan endotransglucosylase/hydrolase protein 9-like
blastp_kegg lcl|pxb:103946960 1 292 + 292 Gaps:4 97.30 296 79.86 5e-178 xyloglucan endotransglucosylase/hydrolase protein 9-like
blastp_kegg lcl|cit:102627322 3 292 + 290 none 99.66 291 78.28 6e-178 xyloglucan endotransglucosylase/hydrolase protein 9-like
blastp_kegg lcl|rcu:RCOM_0505000 18 292 + 275 none 95.16 289 83.27 8e-178 Xyloglucan endotransglucosylase/hydrolase protein 9 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|fve:101301079 3 292 + 290 Gaps:2 99.66 293 79.45 2e-177 xyloglucan endotransglucosylase/hydrolase protein 9-like
blastp_pdb 1un1_B 26 291 + 266 Gaps:10 93.53 278 55.00 1e-103 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 26 291 + 266 Gaps:10 93.53 278 55.00 1e-103 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 26 291 + 266 Gaps:10 93.53 278 55.00 1e-103 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 26 291 + 266 Gaps:10 93.53 278 55.00 1e-103 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2uwb_B 21 287 + 267 Gaps:20 94.76 267 39.92 1e-63 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 21 287 + 267 Gaps:20 94.76 267 39.92 1e-63 mol:protein length:267 CELLULASE
blastp_pdb 2vh9_B 21 287 + 267 Gaps:20 87.24 290 39.92 2e-63 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 21 287 + 267 Gaps:20 87.24 290 39.92 2e-63 mol:protein length:290 CELLULASE
blastp_pdb 2uwc_B 21 287 + 267 Gaps:25 95.20 271 39.53 2e-61 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 21 287 + 267 Gaps:25 95.20 271 39.53 2e-61 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|Q8LDW9|XTH9_ARATH 21 292 + 272 Gaps:6 91.72 290 74.06 7e-154 Xyloglucan endotransglucosylase/hydrolase protein 9 OS Arabidopsis thaliana GN XTH9 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XIW1|XTH5_ARATH 26 291 + 266 Gaps:10 88.74 293 54.23 1e-102 Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS Arabidopsis thaliana GN XTH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q41542|XTH_WHEAT 26 291 + 266 Gaps:10 88.74 293 53.85 2e-101 Probable xyloglucan endotransglucosylase/hydrolase OS Triticum aestivum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q39857|XTH_SOYBN 24 291 + 268 Gaps:11 89.15 295 53.61 3e-100 Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS Glycine max GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q8LNZ5|XTHB_PHAAN 11 291 + 281 Gaps:21 97.61 293 49.65 2e-98 Probable xyloglucan endotransglucosylase/hydrolase protein B OS Phaseolus angularis GN XTHB PE 2 SV 1
blastp_uniprot_sprot sp|P93349|XTH_TOBAC 1 291 + 291 Gaps:14 99.32 295 47.44 3e-98 Probable xyloglucan endotransglucosylase/hydrolase protein OS Nicotiana tabacum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q41638|XTHA_PHAAN 26 291 + 266 Gaps:10 89.04 292 53.08 3e-98 Xyloglucan endotransglucosylase/hydrolase protein A OS Phaseolus angularis GN XTHA PE 1 SV 1
blastp_uniprot_sprot sp|Q6YDN9|XTH_BRAOB 26 291 + 266 Gaps:10 88.14 295 52.69 6e-97 Xyloglucan endotransglucosylase/hydrolase OS Brassica oleracea var. botrytis GN XET16A PE 1 SV 1
blastp_uniprot_sprot sp|Q8LER3|XTH7_ARATH 9 287 + 279 Gaps:12 93.17 293 49.45 6e-97 Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS Arabidopsis thaliana GN XTH7 PE 2 SV 2
blastp_uniprot_sprot sp|Q39099|XTH4_ARATH 26 291 + 266 Gaps:10 87.84 296 51.92 3e-96 Xyloglucan endotransglucosylase/hydrolase protein 4 OS Arabidopsis thaliana GN XTH4 PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 21 292 272 PTHR31062 none none none
SUPERFAMILY 26 291 266 SSF49899 none none IPR013320
PIRSF 1 292 292 PIRSF005604 none none IPR016455
PRINTS 132 149 18 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 114 127 14 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 56 74 19 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 24 292 269 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 21 290 270 G3DSA:2.60.120.200 none none IPR013320
Pfam 239 287 49 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 19 23 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 21 292 272 PTHR31062:SF11 none none none
Pfam 28 204 177 PF00722 none Glycosyl hydrolases family 16 IPR000757

3 Localization

Analysis Start End Length
SignalP_EUK 1 23 22
TMHMM 2 24 22
SignalP_GRAM_POSITIVE 1 24 23

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting