Protein : Qrob_P0612800.2 Q. robur
Protein Identifier  ? Qrob_P0612800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K14397 - cleavage and polyadenylation specificity factor subunit 5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 201  
Kegg Orthology  K14397
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0005849 mRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103333226 1 199 + 199 none 99.50 200 95.98 2e-142 cleavage and polyadenylation specificity factor subunit 5
blastp_kegg lcl|pper:PRUPE_ppa011679mg 1 199 + 199 none 99.50 200 95.98 2e-142 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1496400 1 199 + 199 none 99.50 200 96.48 6e-142 pre-mRNA cleavage factor im 25kD subunit putative
blastp_kegg lcl|pxb:103960555 1 199 + 199 none 99.50 200 95.98 1e-141 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|mdm:103439744 1 199 + 199 none 99.50 200 95.98 1e-141 cleavage and polyadenylation specificity factor subunit 5
blastp_kegg lcl|pxb:103932184 1 199 + 199 none 100.00 199 95.98 1e-141 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|mdm:103440483 1 199 + 199 none 100.00 199 95.98 1e-141 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|cic:CICLE_v10005929mg 1 199 + 199 none 99.50 200 96.48 1e-141 hypothetical protein
blastp_kegg lcl|cit:102607311 1 199 + 199 none 99.50 200 96.48 1e-141 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|tcc:TCM_015155 1 199 + 199 none 99.50 200 95.98 5e-141 Cleavage/polyadenylation specificity factor 25kDa subunit
blastp_pdb 3q2t_B 1 195 + 195 Gaps:1 93.72 207 60.31 4e-82 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2t_A 1 195 + 195 Gaps:1 93.72 207 60.31 4e-82 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2s_B 1 195 + 195 Gaps:1 93.72 207 60.31 4e-82 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2s_A 1 195 + 195 Gaps:1 93.72 207 60.31 4e-82 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3bho_A 1 195 + 195 Gaps:1 93.27 208 60.31 4e-82 mol:protein length:208 Cleavage and polyadenylation specificity fact
blastp_pdb 3n9u_B 1 195 + 195 Gaps:1 84.35 230 60.31 5e-82 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 3n9u_A 1 195 + 195 Gaps:1 84.35 230 60.31 5e-82 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 2cl3_A 1 195 + 195 Gaps:1 84.35 230 60.31 5e-82 mol:protein length:230 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 3p6y_N 6 195 + 190 Gaps:1 93.56 202 61.90 6e-82 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_pdb 3p6y_M 6 195 + 190 Gaps:1 93.56 202 61.90 6e-82 mol:protein length:202 Cleavage and polyadenylation specificity fact
blastp_uniprot_sprot sp|Q5RAI8|CPSF5_PONAB 1 195 + 195 Gaps:1 85.46 227 60.31 3e-81 Cleavage and polyadenylation specificity factor subunit 5 OS Pongo abelii GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|O43809|CPSF5_HUMAN 1 195 + 195 Gaps:1 85.46 227 60.31 3e-81 Cleavage and polyadenylation specificity factor subunit 5 OS Homo sapiens GN NUDT21 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZCA2|CPSF5_BOVIN 1 195 + 195 Gaps:1 85.46 227 60.31 3e-81 Cleavage and polyadenylation specificity factor subunit 5 OS Bos taurus GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KM65|CPSF5_RAT 1 195 + 195 Gaps:1 85.46 227 60.31 5e-81 Cleavage and polyadenylation specificity factor subunit 5 OS Rattus norvegicus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQF3|CPSF5_MOUSE 1 195 + 195 Gaps:1 85.46 227 60.31 5e-81 Cleavage and polyadenylation specificity factor subunit 5 OS Mus musculus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T3C6|CPSF5_DANRE 1 195 + 195 Gaps:1 85.09 228 60.31 1e-80 Cleavage and polyadenylation specificity factor subunit 5 OS Danio rerio GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DJE4|CPSF5_XENLA 1 195 + 195 Gaps:1 85.46 227 60.31 1e-80 Cleavage and polyadenylation specificity factor subunit 5 OS Xenopus laevis GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q55E68|CPSF5_DICDI 13 195 + 183 Gaps:3 91.00 200 58.79 3e-68 Cleavage and polyadenylation specificity factor subunit 5 OS Dictyostelium discoideum GN cpsf5 PE 3 SV 1
rpsblast_cdd gnl|CDD|206040 5 193 + 189 Gaps:1 100.00 188 68.62 1e-94 pfam13869 NUDIX_2 Nucleotide hydrolase. Nudix hydrolases are found in all classes of organism and hydrolyse a wide range of organic pyrophosphates including nucleoside di- and triphosphates di-nucleoside and diphospho-inositol polyphosphates nucleotide sugars and RNA caps with varying degrees of substrate specificity.
rpsblast_kog gnl|CDD|36902 1 197 + 197 Gaps:1 88.69 221 69.90 4e-89 KOG1689 KOG1689 KOG1689 mRNA cleavage factor I subunit [RNA processing and modification].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 1 200 200 PIRSF017888 none none IPR016706
ProSiteProfiles 46 171 126 PS51462 none Nudix hydrolase domain profile. IPR000086
SUPERFAMILY 53 151 99 SSF55811 none none IPR015797
Gene3D 44 105 62 G3DSA:3.90.79.10 none none IPR015797
PANTHER 6 200 195 PTHR13047 none none IPR016706
Pfam 6 193 188 PF13869 none Nucleotide hydrolase IPR016706

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4

0 Targeting