Protein : Qrob_P0608890.2 Q. robur
Protein Identifier  ? Qrob_P0608890.2 Organism . Name  Quercus robur
Score  9.0 Score Type  egn
Protein Description  (M=4) K03021 - DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 263  
Kegg Orthology  K03021
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_044750 2 254 + 253 Gaps:28 24.27 1158 78.65 9e-149 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|csv:101227152 2 254 + 253 Gaps:26 37.20 750 75.99 8e-147 DNA-directed RNA polymerase III subunit rpc2-like
blastp_kegg lcl|vvi:100264262 2 254 + 253 Gaps:28 24.61 1142 76.51 7e-146 POLR3B polymerase (RNA) III (DNA directed) polypeptide B
blastp_kegg lcl|pxb:103941684 2 254 + 253 Gaps:27 52.63 532 73.93 4e-145 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|pper:PRUPE_ppa002270mg 2 255 + 254 Gaps:26 40.40 693 75.71 2e-144 hypothetical protein
blastp_kegg lcl|mtr:MTR_8g023480 2 254 + 253 Gaps:28 42.73 653 74.19 6e-144 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|cic:CICLE_v10000078mg 2 254 + 253 Gaps:28 24.46 1149 75.44 7e-144 hypothetical protein
blastp_kegg lcl|cit:102608510 2 254 + 253 Gaps:28 24.46 1149 75.44 8e-144 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|cmo:103500795 2 254 + 253 Gaps:26 24.09 1158 75.63 9e-144 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|rcu:RCOM_0620590 3 254 + 252 Gaps:28 24.58 1139 76.07 4e-143 DNA-directed RNA polymerase III subunit putative
blastp_pdb 4a93_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3m_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3l_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3k_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3j_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3i_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3g_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3f_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3e_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3d_B 5 254 + 250 Gaps:30 22.06 1224 44.81 3e-64 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|P59470|RPC2_MOUSE 3 258 + 256 Gaps:31 24.45 1133 60.65 3e-104 DNA-directed RNA polymerase III subunit RPC2 OS Mus musculus GN Polr3b PE 2 SV 2
blastp_uniprot_sprot sp|Q9NW08|RPC2_HUMAN 3 258 + 256 Gaps:31 24.45 1133 60.65 3e-104 DNA-directed RNA polymerase III subunit RPC2 OS Homo sapiens GN POLR3B PE 1 SV 2
blastp_uniprot_sprot sp|P25167|RPC2_DROME 4 254 + 251 Gaps:30 23.83 1137 60.52 6e-102 DNA-directed RNA polymerase III subunit RPC2 OS Drosophila melanogaster GN RpIII128 PE 2 SV 2
blastp_uniprot_sprot sp|P22276|RPC2_YEAST 8 254 + 247 Gaps:35 23.32 1149 60.82 3e-99 DNA-directed RNA polymerase III subunit RPC2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RET1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10233|RPC2_SCHPO 4 258 + 255 Gaps:33 23.86 1165 58.63 4e-98 DNA-directed RNA polymerase III subunit RPC2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54IZ9|RPC2_DICDI 4 252 + 249 Gaps:31 16.79 1608 59.63 7e-98 DNA-directed RNA polymerase III subunit rpc2 OS Dictyostelium discoideum GN polr3b PE 3 SV 1
blastp_uniprot_sprot sp|O27124|RPOB1_METTH 5 256 + 252 Gaps:30 45.11 603 46.32 5e-68 DNA-directed RNA polymerase subunit B' OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN rpoB1 PE 3 SV 1
blastp_uniprot_sprot sp|P09845|RPOB1_METTW 5 258 + 254 Gaps:31 45.53 604 45.45 4e-66 DNA-directed RNA polymerase subunit B' OS Methanothermobacter thermoautotrophicus (strain Winter) GN rpoB1 PE 3 SV 2
blastp_uniprot_sprot sp|O28392|RPOB1_ARCFU 5 254 + 250 Gaps:36 44.70 604 46.30 9e-66 DNA-directed RNA polymerase subunit B' OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN rpoB1 PE 4 SV 1
blastp_uniprot_sprot sp|P0CX03|RPOB1_HALSA 52 261 + 210 Gaps:11 33.72 608 54.15 1e-65 DNA-directed RNA polymerase subunit B' OS Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN rpoB1 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 3 65 63 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
PANTHER 3 254 252 PTHR20856:SF8 none none none
Gene3D 66 194 129 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
ProSitePatterns 64 76 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121
SUPERFAMILY 2 255 254 SSF64484 none none none
Pfam 46 216 171 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
PANTHER 3 254 252 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Pfam 218 257 40 PF04560 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 7 IPR007641

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting