Protein : Qrob_P0602670.2 Q. robur
Protein Identifier  ? Qrob_P0602670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K01696 - tryptophan synthase beta chain [EC:4.2.1.20] Code Enzyme  EC:4.2.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 453  
Kegg Orthology  K01696
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0004834 tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
GO:0006568 tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326389 17 452 + 436 Gaps:35 98.94 470 80.86 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pper:PRUPE_ppa005257mg 17 452 + 436 Gaps:35 98.94 470 80.86 0.0 hypothetical protein
blastp_kegg lcl|pxb:103948784 20 452 + 433 Gaps:39 97.88 472 81.39 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pxb:103934558 20 452 + 433 Gaps:39 97.88 472 81.39 0.0 tryptophan synthase beta chain 1-like
blastp_kegg lcl|csv:101220286 5 452 + 448 Gaps:24 99.58 472 79.36 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|cmo:103494920 5 452 + 448 Gaps:24 99.58 472 79.36 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pxb:103926753 27 452 + 426 Gaps:50 94.78 498 78.60 0.0 tryptophan synthase beta chain 1-like
blastp_kegg lcl|gmx:100801288 6 452 + 447 Gaps:29 99.79 471 78.94 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|vvi:100264166 10 452 + 443 Gaps:30 99.34 458 80.44 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|sly:101256529 7 452 + 446 Gaps:25 99.79 468 77.94 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_pdb 1x1q_B 78 450 + 373 Gaps:28 93.54 418 59.85 2e-161 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 1x1q_A 78 450 + 373 Gaps:28 93.54 418 59.85 2e-161 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 1wdw_L 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_J 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_H 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_F 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_D 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_B 84 448 + 365 Gaps:26 98.96 385 58.79 5e-156 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_D 84 448 + 365 Gaps:26 98.20 388 58.79 9e-156 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_C 84 448 + 365 Gaps:26 98.20 388 58.79 9e-156 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_uniprot_sprot sp|P25269|TRBP2_ARATH 4 452 + 449 Gaps:37 99.79 475 78.69 0.0 Tryptophan synthase beta chain 2 chloroplastic OS Arabidopsis thaliana GN TSB2 PE 2 SV 2
blastp_uniprot_sprot sp|O50046|TRPB_CAMAC 12 452 + 441 Gaps:27 99.14 466 79.00 0.0 Tryptophan synthase beta chain 2 chloroplastic OS Camptotheca acuminata GN TSB PE 2 SV 1
blastp_uniprot_sprot sp|P14671|TRPB1_ARATH 34 452 + 419 Gaps:26 93.83 470 82.09 0.0 Tryptophan synthase beta chain 1 chloroplastic OS Arabidopsis thaliana GN TSB1 PE 2 SV 1
blastp_uniprot_sprot sp|P43284|TRPB2_MAIZE 66 452 + 387 Gaps:21 92.10 443 81.86 0.0 Tryptophan synthase beta chain 2 chloroplastic (Fragment) OS Zea mays GN TSB2 PE 2 SV 1
blastp_uniprot_sprot sp|P43283|TRPB1_MAIZE 85 452 + 368 Gaps:21 100.00 389 84.06 0.0 Tryptophan synthase beta chain 1 (Fragment) OS Zea mays GN TSB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8YZP7|TRPB1_NOSS1 75 451 + 377 Gaps:21 97.31 409 74.37 0.0 Tryptophan synthase beta chain 1 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN trpB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q118P8|TRPB_TRIEI 69 451 + 383 Gaps:23 98.29 409 74.38 0.0 Tryptophan synthase beta chain OS Trichodesmium erythraeum (strain IMS101) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|Q8YQM6|TRPB2_NOSS1 75 450 + 376 Gaps:21 96.13 413 74.31 0.0 Tryptophan synthase beta chain 2 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q3MBV3|TRPB_ANAVT 76 450 + 375 Gaps:21 95.88 413 74.49 0.0 Tryptophan synthase beta chain OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|Q59992|TRPB_SYNY3 76 452 + 377 Gaps:21 96.60 412 73.12 0.0 Tryptophan synthase beta chain OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN trpB PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 78 452 375 PTHR10314 none none none
ProSitePatterns 161 175 15 PS00168 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" Tryptophan synthase beta chain pyridoxal-phosphate attachment site. IPR006653
PANTHER 78 452 375 PTHR10314:SF76 none none none
TIGRFAM 82 395 314 TIGR00263 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" trpB: tryptophan synthase, beta subunit IPR006654
SUPERFAMILY 78 448 371 SSF53686 none none IPR001926
Gene3D 395 450 56 G3DSA:3.40.50.1100 none none none
Gene3D 287 341 55 G3DSA:3.40.50.1100 none none none
Pfam 149 437 289 PF00291 none Pyridoxal-phosphate dependent enzyme IPR001926
Gene3D 151 286 136 G3DSA:3.40.50.1100 none none none
Gene3D 84 111 28 G3DSA:3.40.50.1100 none none none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting