Protein : Qrob_P0600580.2 Q. robur
Protein Identifier  ? Qrob_P0600580.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR21297:SF2 - DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4 (PTHR21297:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 211  
Kegg Orthology  K03012
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0044237 cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030466 2 192 + 191 Gaps:4 82.68 231 63.35 1e-69 DNA-directed RNA polymerase II subunit rpb4 putative isoform 1
blastp_kegg lcl|csv:101229142 2 192 + 191 Gaps:9 82.73 220 63.19 4e-68 DNA-directed RNA polymerase II subunit rpb4-like
blastp_kegg lcl|mdm:103446838 2 193 + 192 Gaps:6 85.32 218 61.83 1e-67 DNA-directed RNA polymerases IV and V subunit 4
blastp_kegg lcl|cmo:103485216 2 192 + 191 Gaps:9 82.73 220 63.19 2e-67 DNA-directed RNA polymerases IV and V subunit 4
blastp_kegg lcl|pxb:103963707 2 193 + 192 Gaps:6 85.32 218 61.83 3e-67 DNA-directed RNA polymerases IV and V subunit 4
blastp_kegg lcl|csv:101213971 2 196 + 195 Gaps:9 76.86 242 61.29 4e-67 uncharacterized LOC101213971
blastp_kegg lcl|pmum:103324381 2 193 + 192 Gaps:6 82.30 226 64.52 4e-66 DNA-directed RNA polymerases IV and V subunit 4
blastp_kegg lcl|vvi:100246461 2 192 + 191 Gaps:3 79.50 239 60.53 4e-65 uncharacterized LOC100246461
blastp_kegg lcl|pper:PRUPE_ppa010773mg 2 193 + 192 Gaps:7 82.22 225 64.86 9e-65 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s00490g 37 193 + 157 Gaps:3 79.19 197 69.87 1e-64 hypothetical protein
blastp_uniprot_sprot sp|Q6DBA5|NRPD4_ARATH 2 192 + 191 Gaps:14 87.32 205 49.16 2e-44 DNA-directed RNA polymerases IV and V subunit 4 OS Arabidopsis thaliana GN NRPD4 PE 1 SV 2
blastp_uniprot_sprot sp|O48890|NRPB4_ARATH 73 190 + 118 Gaps:1 86.23 138 39.50 6e-22 DNA-directed RNA polymerase II subunit 4 OS Arabidopsis thaliana GN NRPB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q54S04|RPB4_DICDI 111 190 + 80 Gaps:3 49.68 155 38.96 6e-09 DNA-directed RNA polymerase II subunit rpb4 OS Dictyostelium discoideum GN polr2d PE 3 SV 1
rpsblast_cdd gnl|CDD|202793 80 190 + 111 Gaps:2 99.09 110 28.44 2e-12 pfam03874 RNA_pol_Rpb4 RNA polymerase Rpb4. This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
rpsblast_kog gnl|CDD|37562 68 190 + 123 Gaps:4 90.30 134 33.06 1e-13 KOG2351 KOG2351 KOG2351 RNA polymerase II fourth largest subunit [Transcription].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 72 193 122 SM00657 none DNA-directed RNA-polymerase II subunit IPR006590
PANTHER 26 191 166 PTHR21297:SF2 none none none
SUPERFAMILY 57 190 134 SSF47819 none none IPR010997
PANTHER 26 191 166 PTHR21297 none none none
Pfam 81 189 109 PF03874 none RNA polymerase Rpb4 IPR005574

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting