Protein : Qrob_P0596950.2 Q. robur
Protein Identifier  ? Qrob_P0596950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF00448//PF02978 - SRP54-type protein, GTPase domain // Signal peptide binding domain Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 237  
Kegg Orthology  K03106
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO:0008312 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
GO:0048500 signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328099 1 236 + 236 none 47.68 495 93.22 4e-156 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|pper:PRUPE_ppa004695mg 1 236 + 236 none 47.68 495 93.22 5e-156 hypothetical protein
blastp_kegg lcl|gmx:100792778 1 235 + 235 none 47.47 495 93.19 2e-155 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|pvu:PHAVU_010G156800g 1 236 + 236 none 47.68 495 92.80 4e-155 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0901100 1 235 + 235 none 47.28 497 92.77 4e-155 signal recognition particle 54 kD protein putative
blastp_kegg lcl|tcc:TCM_027264 1 235 + 235 none 47.57 494 92.77 5e-155 Signal recognition particle SRP54 subunit protein
blastp_kegg lcl|mdm:103437288 1 236 + 236 none 47.68 495 91.95 4e-154 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|pop:POPTR_0001s26040g 1 236 + 236 none 47.68 495 90.25 4e-153 POPTRDRAFT_172222 Signal recognition particle 54 kDa protein 1
blastp_kegg lcl|vvi:100261219 1 236 + 236 none 47.68 495 90.25 8e-153 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|cit:102616618 1 235 + 235 none 47.57 494 91.49 1e-152 signal recognition particle 54 kDa protein 2-like
blastp_pdb 2j37_W 1 232 + 232 Gaps:11 47.82 504 48.96 4e-69 mol:protein length:504 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (S
blastp_pdb 3dm5_B 1 191 + 191 Gaps:10 41.31 443 40.44 2e-36 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3dm5_A 1 191 + 191 Gaps:10 41.31 443 40.44 2e-36 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3ndb_B 1 174 + 174 Gaps:4 37.44 454 40.00 1e-32 mol:protein length:454 Signal recognition 54 kDa protein
blastp_pdb 2v3c_D 1 163 + 163 Gaps:4 36.81 432 42.14 1e-32 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 2v3c_C 1 163 + 163 Gaps:4 36.81 432 42.14 1e-32 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 1mfq_C 67 177 + 111 Gaps:3 88.37 129 50.00 6e-32 mol:protein length:129 signal recognition particle 54kDa protein
blastp_pdb 2go5_W 69 173 + 105 Gaps:3 99.08 109 50.00 8e-30 mol:protein length:109 Signal recognition particle 54 kDa protein (S
blastp_pdb 1ry1_W 69 173 + 105 Gaps:3 99.08 109 50.00 8e-30 mol:protein length:109 Signal recognition particle 54 kDa protein
blastp_pdb 1qb2_B 69 173 + 105 Gaps:3 99.08 109 50.00 8e-30 mol:protein length:109 HUMAN SIGNAL RECOGNITION PARTICLE 54 KD PROTE
blastp_uniprot_sprot sp|P49967|SR543_ARATH 1 236 + 236 none 47.68 495 87.71 6e-150 Signal recognition particle 54 kDa protein 3 OS Arabidopsis thaliana GN SRP-54C PE 2 SV 2
blastp_uniprot_sprot sp|P49972|SR542_SOLLC 1 226 + 226 none 45.29 499 91.59 4e-148 Signal recognition particle 54 kDa protein 2 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|P49971|SR541_SOLLC 1 226 + 226 Gaps:1 45.36 496 85.78 1e-135 Signal recognition particle 54 kDa protein 1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P49966|SR542_ARATH 1 236 + 236 none 47.48 497 76.27 8e-126 Signal recognition particle 54 kDa protein 2 OS Arabidopsis thaliana GN SRP-54B PE 3 SV 2
blastp_uniprot_sprot sp|P49968|SR541_HORVU 1 227 + 227 Gaps:1 45.47 497 77.43 4e-124 Signal recognition particle 54 kDa protein 1 OS Hordeum vulgare GN SRP54-1 PE 2 SV 1
blastp_uniprot_sprot sp|P49969|SR542_HORVU 1 227 + 227 Gaps:1 45.47 497 77.43 4e-124 Signal recognition particle 54 kDa protein 2 OS Hordeum vulgare GN SRP54-2 PE 2 SV 1
blastp_uniprot_sprot sp|P37106|SR541_ARATH 1 226 + 226 Gaps:16 43.84 479 75.71 2e-104 Signal recognition particle 54 kDa protein 1 OS Arabidopsis thaliana GN SRP-54A PE 2 SV 1
blastp_uniprot_sprot sp|P49970|SR543_HORVU 1 233 + 233 Gaps:5 46.65 493 64.78 8e-102 Signal recognition particle 54 kDa protein 3 OS Hordeum vulgare GN SRP54-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R4R6|SRP54_PONAB 1 232 + 232 Gaps:11 47.82 504 48.96 1e-68 Signal recognition particle 54 kDa protein OS Pongo abelii GN SRP54 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R965|SRP54_MACFA 1 232 + 232 Gaps:11 47.82 504 48.96 1e-68 Signal recognition particle 54 kDa protein OS Macaca fascicularis GN SRP54 PE 2 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 10 23 14 PS00300 "Reactome:REACT_15380" SRP54-type proteins GTP-binding domain signature. IPR000897
Pfam 68 169 102 PF02978 none Signal peptide binding domain IPR004125
PANTHER 4 222 219 PTHR11564 none none none
Gene3D 4 38 35 G3DSA:3.40.50.300 none none IPR027417
Pfam 4 37 34 PF00448 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
SUPERFAMILY 39 174 136 SSF47446 none none IPR004125
Gene3D 68 174 107 G3DSA:1.10.260.30 none none IPR004125

0 Localization

0 Qtllist

0 Targeting