Protein : Qrob_P0595850.2 Q. robur
Protein Identifier  ? Qrob_P0595850.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02295 - cryptochrome Code Enzyme  EC:4.1.99.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 368  
Kegg Orthology  K02295
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003913 DNA photolyase activity Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0897900 5 364 + 360 Gaps:27 73.00 537 76.28 3e-138 DNA photolyase putative (EC:4.1.99.3)
blastp_kegg lcl|pper:PRUPE_ppa003967mg 1 363 + 363 Gaps:29 73.18 537 75.06 2e-137 hypothetical protein
blastp_kegg lcl|pmum:103328033 1 363 + 363 Gaps:29 73.18 537 74.81 5e-136 (6-4)DNA photolyase
blastp_kegg lcl|pop:POPTR_0003s05870g 1 365 + 365 Gaps:26 67.86 613 71.15 1e-135 POPTRDRAFT_756784 hypothetical protein
blastp_kegg lcl|mdm:103440697 5 366 + 362 Gaps:28 73.18 537 75.06 5e-135 (6-4)DNA photolyase
blastp_kegg lcl|tcc:TCM_047060 5 366 + 362 Gaps:59 70.02 517 72.65 1e-133 DNA photolyase family protein isoform 1
blastp_kegg lcl|vvi:100256713 4 366 + 363 Gaps:27 69.68 564 74.55 2e-132 (6-4)DNA photolyase-like
blastp_kegg lcl|csv:101221517 7 366 + 360 Gaps:31 72.50 549 70.85 6e-132 (6-4)DNA photolyase-like
blastp_kegg lcl|cmo:103499773 4 365 + 362 Gaps:26 70.28 562 70.38 3e-131 (6-4)DNA photolyase
blastp_kegg lcl|sot:102605735 4 366 + 363 Gaps:26 73.47 539 68.94 1e-126 (6-4)DNA photolyase-like
blastp_pdb 3fy4_C 1 365 + 365 Gaps:29 73.56 537 68.61 2e-125 mol:protein length:537 6-4 photolyase
blastp_pdb 3fy4_B 1 365 + 365 Gaps:29 73.56 537 68.61 2e-125 mol:protein length:537 6-4 photolyase
blastp_pdb 3fy4_A 1 365 + 365 Gaps:29 73.56 537 68.61 2e-125 mol:protein length:537 6-4 photolyase
blastp_pdb 3cvx_A 7 329 + 323 Gaps:44 64.64 543 40.74 2e-43 mol:protein length:543 RE11660p
blastp_pdb 3cvw_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660p
blastp_pdb 3cvy_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660p
blastp_pdb 3cvv_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660p
blastp_pdb 3cvu_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660p
blastp_pdb 2wq7_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660P
blastp_pdb 2wq6_A 7 329 + 323 Gaps:44 64.64 543 40.74 3e-43 mol:protein length:543 RE11660P
blastp_uniprot_sprot sp|O48652|UVR3_ARATH 1 365 + 365 Gaps:29 71.04 556 68.61 1e-124 (6-4)DNA photolyase OS Arabidopsis thaliana GN UVR3 PE 1 SV 2
blastp_uniprot_sprot sp|Q0E2Y1|UVR3_ORYSJ 10 363 + 354 Gaps:34 70.96 551 57.29 1e-81 (6-4)DNA photolyase OS Oryza sativa subsp. japonica GN UVR3 PE 3 SV 1
blastp_uniprot_sprot sp|Q70AD6|CRY1_SPAJD 6 331 + 326 Gaps:39 61.84 587 40.22 9e-49 Cryptochrome-1 OS Spalax judaei GN CRY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q32Q86|CRY1_RAT 6 331 + 326 Gaps:47 61.73 588 39.94 1e-48 Cryptochrome-1 OS Rattus norvegicus GN Cry1 PE 1 SV 1
blastp_uniprot_sprot sp|P97784|CRY1_MOUSE 6 323 + 318 Gaps:47 58.58 606 40.56 2e-48 Cryptochrome-1 OS Mus musculus GN Cry1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZZY0|CRY1_SYLBO 6 331 + 326 Gaps:45 58.55 620 40.77 2e-48 Cryptochrome-1 OS Sylvia borin GN CRY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q16526|CRY1_HUMAN 6 331 + 326 Gaps:39 61.95 586 39.94 3e-48 Cryptochrome-1 OS Homo sapiens GN CRY1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8WP19|CRY1_MACFA 6 331 + 326 Gaps:39 61.95 586 39.94 3e-48 Cryptochrome-1 OS Macaca fascicularis GN CRY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8QG61|CRY1_CHICK 6 331 + 326 Gaps:45 58.45 621 40.50 1e-47 Cryptochrome-1 OS Gallus gallus GN CRY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9R194|CRY2_MOUSE 6 331 + 326 Gaps:47 60.98 592 40.72 4e-46 Cryptochrome-2 OS Mus musculus GN Cry2 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 157 213 57 G3DSA:1.25.40.80 none none none
Coils 335 363 29 Coil none none none
Pfam 243 323 81 PF03441 none FAD binding domain of DNA photolyase IPR005101
SUPERFAMILY 243 326 84 SSF48173 none none IPR005101
Gene3D 5 156 152 G3DSA:3.40.50.620 none none IPR014729
SUPERFAMILY 6 188 183 SSF52425 none none IPR006050
ProSiteProfiles 7 145 139 PS51645 none Photolyase/cryptochrome alpha/beta domain profile. IPR006050
PANTHER 9 360 352 PTHR11455 none none none
Gene3D 243 322 80 G3DSA:1.10.579.10 none none none
Pfam 9 169 161 PF00875 none DNA photolyase IPR006050
PANTHER 9 360 352 PTHR11455:SF11 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting