Protein : Qrob_P0595370.2 Q. robur
Protein Identifier  ? Qrob_P0595370.2 Organism . Name  Quercus robur
Protein Description  (M=2) PTHR10641:SF457 - TRANSCRIPTION FACTOR AS1 (PTHR10641:SF457) Alias (in v1)  Qrob_P0000310.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 403  
Kegg Orthology  K09422
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0010338 leaf formation The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103960282 1 400 + 400 Gaps:37 98.93 373 68.02 2e-155 protein rough sheath 2 homolog
blastp_kegg lcl|pxb:103940825 1 400 + 400 Gaps:37 98.93 373 68.02 9e-155 protein rough sheath 2 homolog
blastp_kegg lcl|mdm:103404705 1 393 + 393 Gaps:41 97.84 370 68.51 5e-151 protein rough sheath 2 homolog
blastp_kegg lcl|cic:CICLE_v10011915mg 1 402 + 402 Gaps:58 98.73 393 67.78 5e-151 hypothetical protein
blastp_kegg lcl|mdm:103417095 1 393 + 393 Gaps:41 97.84 370 68.23 3e-150 protein rough sheath 2 homolog
blastp_kegg lcl|cit:102623179 1 402 + 402 Gaps:60 98.72 391 67.36 3e-150 transcription factor AS1-like
blastp_kegg lcl|vvi:100258292 1 401 + 401 Gaps:38 98.70 384 64.38 2e-146 transcription factor AS1-like
blastp_kegg lcl|tcc:TCM_019507 1 396 + 396 Gaps:52 99.45 362 74.72 1e-144 Myb-like HTH transcriptional regulator family protein
blastp_kegg lcl|pop:POPTR_0017s13950g 1 390 + 390 Gaps:63 96.69 363 69.80 1e-143 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s10250g 1 387 + 387 Gaps:59 96.95 361 69.43 2e-141 POPTRDRAFT_556142 hypothetical protein
blastp_pdb 3zqc_J 11 118 + 108 Gaps:3 80.15 131 39.05 5e-16 mol:protein length:131 MYB3
blastp_pdb 3zqc_G 11 118 + 108 Gaps:3 80.15 131 39.05 5e-16 mol:protein length:131 MYB3
blastp_pdb 3zqc_D 11 118 + 108 Gaps:3 80.15 131 39.05 5e-16 mol:protein length:131 MYB3
blastp_pdb 3zqc_A 11 118 + 108 Gaps:3 80.15 131 39.05 5e-16 mol:protein length:131 MYB3
blastp_pdb 1msf_C 7 92 + 86 Gaps:3 79.05 105 42.17 3e-14 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1mse_C 7 92 + 86 Gaps:3 79.05 105 42.17 3e-14 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1gv2_A 7 92 + 86 Gaps:3 79.05 105 42.17 3e-14 mol:protein length:105 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1a5j_A 7 92 + 86 Gaps:3 75.45 110 43.37 4e-14 mol:protein length:110 B-MYB
blastp_pdb 1h8a_C 7 92 + 86 Gaps:3 64.84 128 42.17 4e-14 mol:protein length:128 MYB TRANSFORMING PROTEIN
blastp_pdb 2kdz_A 10 112 + 103 Gaps:3 93.46 107 38.00 6e-14 mol:protein length:107 MYB24
blastp_uniprot_sprot sp|O80931|AS1_ARATH 1 389 + 389 Gaps:55 97.55 367 49.16 2e-95 Transcription factor AS1 OS Arabidopsis thaliana GN AS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S7B2|RS2_MAIZE 1 400 + 400 Gaps:51 98.11 370 46.56 2e-87 Protein rough sheath 2 OS Zea mays GN RS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q94IB1|RS2_ORYSJ 1 390 + 390 Gaps:29 78.95 342 58.89 4e-59 Protein rough sheath 2 homolog OS Oryza sativa subsp. japonica GN RS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LTF7|MYB82_ARATH 3 107 + 105 Gaps:2 51.24 201 43.69 3e-22 Transcription factor MYB82 OS Arabidopsis thaliana GN MYB82 PE 1 SV 1
blastp_uniprot_sprot sp|P81391|MYB05_ANTMA 7 166 + 160 Gaps:6 78.05 205 35.00 3e-22 Myb-related protein 305 OS Antirrhinum majus GN MYB305 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LX82|MYB48_ARATH 7 113 + 107 Gaps:2 41.02 256 41.90 4e-22 Transcription factor MYB48 OS Arabidopsis thaliana GN MYB48 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK95|MYB21_ARATH 7 110 + 104 Gaps:2 45.13 226 42.16 1e-21 Transcription factor MYB21 OS Arabidopsis thaliana GN MYB21 PE 1 SV 1
blastp_uniprot_sprot sp|Q4JL84|MYB59_ARATH 7 113 + 107 Gaps:2 44.68 235 40.95 1e-21 Transcription factor MYB59 OS Arabidopsis thaliana GN MYB59 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SM27|MY104_ARATH 4 100 + 97 Gaps:2 24.87 382 46.32 3e-21 Transcription factor MYB104 OS Arabidopsis thaliana GN MYB104 PE 2 SV 3
blastp_uniprot_sprot sp|P81396|MYB40_ANTMA 7 112 + 106 Gaps:3 53.03 198 41.90 6e-21 Myb-related protein 340 OS Antirrhinum majus GN MYB340 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 316 331 16 PTHR10641:SF457 none none IPR031055
Coils 303 343 41 Coil none none none
SUPERFAMILY 4 98 95 SSF46689 none none IPR009057
PANTHER 1 107 107 PTHR10641 none none none
ProSiteProfiles 58 108 51 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
PANTHER 316 331 16 PTHR10641 none none none
Coils 351 372 22 Coil none none none
SMART 58 106 49 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SMART 3 55 53 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
Gene3D 6 60 55 G3DSA:1.10.10.60 none none IPR009057
PANTHER 1 107 107 PTHR10641:SF457 none none IPR031055
Gene3D 61 108 48 G3DSA:1.10.10.60 none none IPR009057
Pfam 7 68 62 PF13921 none Myb-like DNA-binding domain none
ProSiteProfiles 1 57 57 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting