Protein : Qrob_P0595280.2 Q. robur
Protein Identifier  ? Qrob_P0595280.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02863 - large subunit ribosomal protein L1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 385  
Kegg Orthology  K02863
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330661 1 382 + 382 Gaps:28 99.72 355 81.64 0.0 50S ribosomal protein L1 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa007797mg 1 382 + 382 Gaps:28 99.72 355 81.07 0.0 hypothetical protein
blastp_kegg lcl|mdm:103412799 1 382 + 382 Gaps:34 99.43 350 81.61 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|pxb:103945512 1 382 + 382 Gaps:34 99.43 350 81.32 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|fve:101298747 1 382 + 382 Gaps:33 99.44 359 79.55 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|mdm:103438449 1 382 + 382 Gaps:32 99.43 352 80.29 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|pxb:103957594 1 382 + 382 Gaps:34 99.43 350 80.75 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0963900 4 384 + 381 Gaps:31 99.44 360 78.21 0.0 50S ribosomal protein L1p putative
blastp_kegg lcl|gmx:100808549 7 382 + 376 Gaps:38 98.55 345 80.88 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_kegg lcl|cit:102631176 4 382 + 379 Gaps:24 98.92 369 74.52 0.0 50S ribosomal protein L1 chloroplastic-like
blastp_pdb 3bbo_D 5 382 + 378 Gaps:33 99.15 352 68.77 2e-152 mol:protein length:352 Ribosomal Protein L1
blastp_pdb 3kno_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3knm_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3knk_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3kni_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3kiy_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3kiw_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3kit_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3kir_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_pdb 3huz_C 132 371 + 240 Gaps:18 97.82 229 48.66 1e-69 mol:protein length:229 50S ribosomal protein L1
blastp_uniprot_sprot sp|Q9LY66|RK1_ARATH 5 382 + 378 Gaps:51 98.55 346 73.31 5e-162 50S ribosomal protein L1 chloroplastic OS Arabidopsis thaliana GN RPL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LE95|RK1_SPIOL 5 382 + 378 Gaps:33 99.15 352 68.77 6e-152 50S ribosomal protein L1 chloroplastic OS Spinacia oleracea GN RPL1 PE 1 SV 1
blastp_uniprot_sprot sp|P49208|RK1_PEA 119 302 + 184 Gaps:17 80.29 208 88.02 4e-95 50S ribosomal protein L1 chloroplastic (Fragment) OS Pisum sativum GN RPL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q3MA18|RL1_ANAVT 134 379 + 246 Gaps:18 95.80 238 60.96 1e-92 50S ribosomal protein L1 OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|B0JNQ5|RL1_MICAN 134 379 + 246 Gaps:18 96.20 237 61.40 4e-92 50S ribosomal protein L1 OS Microcystis aeruginosa (strain NIES-843) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|Q8YLJ7|RL1_NOSS1 134 379 + 246 Gaps:18 95.80 238 60.53 7e-92 50S ribosomal protein L1 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|Q8DM27|RL1_THEEB 131 379 + 249 Gaps:18 97.47 237 59.74 1e-90 50S ribosomal protein L1 OS Thermosynechococcus elongatus (strain BP-1) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|Q31QK4|RL1_SYNE7 131 379 + 249 Gaps:18 97.47 237 58.87 4e-90 50S ribosomal protein L1 OS Synechococcus elongatus (strain PCC 7942) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|Q5N3N8|RL1_SYNP6 131 379 + 249 Gaps:18 97.47 237 58.44 3e-89 50S ribosomal protein L1 OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN rplA PE 3 SV 1
blastp_uniprot_sprot sp|B7JWT7|RL1_CYAP8 131 379 + 249 Gaps:17 97.48 238 59.48 7e-89 50S ribosomal protein L1 OS Cyanothece sp. (strain PCC 8801) GN rplA PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 136 372 237 SSF56808 none none IPR023674
Gene3D 258 305 48 G3DSA:3.40.50.790 none none IPR016095
Gene3D 198 252 55 G3DSA:3.40.50.790 none none IPR016095
PANTHER 294 384 91 PTHR23105:SF40 none none none
PANTHER 294 384 91 PTHR23105 none none none
Hamap 131 375 245 MF_01318_B none 50S ribosomal protein L1 [rplA]. IPR005878
Phobius 16 23 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
TIGRFAM 133 374 242 TIGR01169 none rplA_bact: ribosomal protein uL1 IPR005878
Gene3D 307 373 67 G3DSA:3.30.190.20 none none IPR016094
Gene3D 146 197 52 G3DSA:3.30.190.20 none none IPR016094
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 150 252 103 PF00687 none Ribosomal protein L1p/L10e family IPR028364
Pfam 269 367 99 PF00687 none Ribosomal protein L1p/L10e family IPR028364
Phobius 24 384 361 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting