Protein : Qrob_P0593310.2 Q. robur
Protein Identifier  ? Qrob_P0593310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12526//PTHR12526:SF318 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED Code Enzyme  EC:2.4.1.21
Gene Prediction Quality  validated Protein length 

Sequence

Length: 628  
Kegg Orthology  K00703
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0004373 glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002686mg 1 626 + 626 Gaps:38 99.84 645 71.74 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333651 1 626 + 626 Gaps:36 99.84 643 71.50 0.0 soluble starch synthase 1 chloroplastic/amyloplastic
blastp_kegg lcl|mdm:103420788 1 626 + 626 Gaps:34 99.84 645 70.19 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pop:POPTR_0015s01470g 1 627 + 627 Gaps:34 100.00 649 70.88 0.0 POPTRDRAFT_1100713 hypothetical protein
blastp_kegg lcl|cit:102610465 1 626 + 626 Gaps:43 99.85 662 68.99 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|cit:102630022 1 626 + 626 Gaps:43 99.85 662 68.99 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|mdm:103443655 1 626 + 626 Gaps:35 99.84 644 70.92 0.0 starch synthase 1 chloroplastic/amyloplastic
blastp_kegg lcl|pxb:103943441 1 626 + 626 Gaps:35 99.84 644 71.07 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|fve:101291765 1 627 + 627 Gaps:44 100.00 645 69.61 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pxb:103958150 1 626 + 626 Gaps:35 99.85 646 68.06 0.0 starch synthase 1 chloroplastic/amyloplastic-like
blastp_pdb 1rzv_B 144 616 + 473 Gaps:54 97.11 485 38.85 1e-76 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzv_A 144 616 + 473 Gaps:54 97.11 485 38.85 1e-76 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_B 144 616 + 473 Gaps:54 97.11 485 38.85 1e-76 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_A 144 616 + 473 Gaps:54 97.11 485 38.85 1e-76 mol:protein length:485 Glycogen synthase 1
blastp_pdb 3d1j_A 144 616 + 473 Gaps:49 98.95 477 34.53 4e-71 mol:protein length:477 Glycogen synthase
blastp_pdb 3guh_A 144 616 + 473 Gaps:49 97.32 485 34.53 4e-70 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4u_A 144 616 + 473 Gaps:49 97.32 485 34.53 4e-70 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4t_A 144 616 + 473 Gaps:49 97.32 485 34.53 4e-70 mol:protein length:485 Glycogen synthase
blastp_pdb 2qzs_A 144 616 + 473 Gaps:49 97.32 485 34.53 4e-70 mol:protein length:485 glycogen synthase
blastp_pdb 3cx4_A 144 616 + 473 Gaps:49 97.32 485 34.32 3e-69 mol:protein length:485 Glycogen synthase
blastp_uniprot_sprot sp|P93568|SSY1_SOLTU 1 626 + 626 Gaps:48 99.84 641 67.50 0.0 Soluble starch synthase 1 chloroplastic/amyloplastic OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNF2|SSY1_ARATH 71 627 + 557 Gaps:53 92.02 652 67.00 0.0 Starch synthase 1 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DEC8|SSY1_ORYSJ 109 626 + 518 Gaps:30 84.87 641 69.12 0.0 Soluble starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN Os06g0160700 PE 1 SV 1
blastp_uniprot_sprot sp|A2Y9M4|SSY1_ORYSI 109 626 + 518 Gaps:30 84.87 641 68.93 0.0 Soluble starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. indica GN OsI_021017 PE 2 SV 1
blastp_uniprot_sprot sp|Q43654|SSY1_WHEAT 126 626 + 501 Gaps:28 81.14 647 70.67 0.0 Starch synthase 1 chloroplastic/amyloplastic OS Triticum aestivum GN WSSI-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9MAC8|SSY2_ARATH 144 616 + 473 Gaps:49 61.11 792 50.62 2e-157 Starch synthase 2 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q43093|SSG2_PEA 110 616 + 507 Gaps:52 69.02 752 47.40 3e-152 Granule-bound starch synthase 2 chloroplastic/amyloplastic OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q43847|SSY2_SOLTU 144 616 + 473 Gaps:51 63.10 767 50.41 3e-151 Granule-bound starch synthase 2 chloroplastic/amyloplastic OS Solanum tuberosum GN SS2 PE 1 SV 3
blastp_uniprot_sprot sp|Q7XE48|SSY21_ORYSJ 144 616 + 473 Gaps:49 64.62 749 49.59 7e-149 Soluble starch synthase 2-1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN SSII-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6Z2T8|SSY22_ORYSJ 144 616 + 473 Gaps:49 69.74 694 48.55 7e-145 Soluble starch synthase 2-2 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN SSII-2 PE 2 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 432 578 147 PF00534 none Glycosyl transferases group 1 IPR001296
PANTHER 428 626 199 PTHR12526:SF318 none none none
Hamap 143 619 477 MF_00484 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Glycogen synthase [glgA]. IPR011835
PANTHER 140 404 265 PTHR12526:SF318 none none none
Gene3D 390 601 212 G3DSA:3.40.50.2000 none none none
PANTHER 140 404 265 PTHR12526 none none none
PANTHER 428 626 199 PTHR12526 none none none
TIGRFAM 144 617 474 TIGR02095 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" glgA: glycogen/starch synthase, ADP-glucose type IPR011835
SUPERFAMILY 141 616 476 SSF53756 none none none
Pfam 144 376 233 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 23 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting