Protein : Qrob_P0591910.2 Q. robur

Protein Identifier  ? Qrob_P0591910.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) PTHR10322:SF5 - DNA POLYMERASE ZETA CATALYTIC SUBUNIT Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 295  

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008408 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO:0016035 zeta DNA polymerase complex A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer.
GO:0019985 translesion synthesis The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344607 2 263 + 262 Gaps:22 10.52 2699 50.00 3e-73 DNA polymerase zeta catalytic subunit
blastp_kegg lcl|vvi:100263126 1 260 + 260 Gaps:43 13.64 2002 52.01 2e-69 uncharacterized LOC100263126
blastp_kegg lcl|pper:PRUPE_ppa000111mg 2 263 + 262 Gaps:45 14.51 1771 52.14 3e-65 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1431670 1 260 + 260 Gaps:34 14.23 2066 46.60 1e-64 DNA polymerase zeta catalytic subunit putative (EC:2.7.7.7)
blastp_kegg lcl|mdm:103451319 2 260 + 259 Gaps:38 12.62 2068 51.34 2e-60 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|tcc:TCM_026537 1 260 + 260 Gaps:67 15.09 2035 44.30 5e-60 Recovery protein 3 isoform 1
blastp_kegg lcl|mdm:103450935 2 260 + 259 Gaps:38 25.46 1025 50.19 3e-59 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|gmx:100777934 1 260 + 260 Gaps:25 13.82 1976 45.79 4e-56 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|pop:POPTR_0013s02320g 18 260 + 243 Gaps:47 11.21 1855 54.81 4e-53 POPTRDRAFT_240745 POPTRDRAFT_729606 hypothetical protein
blastp_kegg lcl|cam:101503172 35 260 + 226 Gaps:49 13.32 1914 47.06 1e-52 DNA polymerase zeta catalytic subunit-like
blastp_uniprot_sprot sp|Q766Z3|REV3_ARATH 34 260 + 227 Gaps:32 13.49 1890 43.92 3e-50 DNA polymerase zeta catalytic subunit OS Arabidopsis thaliana GN REV3 PE 2 SV 1
blastp_uniprot_sprot sp|Q61493|DPOLZ_MOUSE 90 264 + 175 Gaps:40 6.76 3122 24.64 5e-07 DNA polymerase zeta catalytic subunit OS Mus musculus GN Rev3l PE 1 SV 3
blastp_uniprot_sprot sp|O60673|DPOLZ_HUMAN 119 265 + 147 Gaps:24 5.40 3130 25.44 2e-06 DNA polymerase zeta catalytic subunit OS Homo sapiens GN REV3L PE 1 SV 2
rpsblast_cdd gnl|CDD|99821 157 279 + 123 Gaps:18 58.44 231 31.11 1e-15 cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI ExoII and ExoIII without the four conserved acidic residues that are crucial for metal binding and catalysis.
rpsblast_kog gnl|CDD|36186 32 265 + 234 Gaps:41 18.21 1488 26.57 3e-24 KOG0968 KOG0968 KOG0968 DNA polymerase zeta catalytic subunit [Replication recombination and repair].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 165 288 124 G3DSA:3.30.420.10 none none IPR012337
PANTHER 164 266 103 PTHR10322 none none none
SUPERFAMILY 166 267 102 SSF53098 none none IPR012337
PANTHER 164 266 103 PTHR10322:SF5 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7";signature_desc=DNA POLYMERASE ZETA CATALYTIC SUBUNIT none IPR030559
Pfam 189 263 75 PF03104 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B, exonuclease domain IPR006133

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting