Protein : Qrob_P0585320.2 Q. robur
Protein Identifier  ? Qrob_P0585320.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K01899 - succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] Code Enzyme  EC:6.2.1.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 336  
Kegg Orthology  K01899
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0048037 cofactor binding Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103504689 1 335 + 335 Gaps:9 100.00 342 89.47 0.0 probable succinyl-CoA ligase [ADP-forming] subunit alpha mitochondrial
blastp_kegg lcl|pxb:103946849 1 335 + 335 Gaps:1 100.00 334 90.12 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-2 mitochondrial
blastp_kegg lcl|sot:102590419 1 334 + 334 Gaps:4 100.00 332 87.95 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial-like
blastp_kegg lcl|csv:101206269 1 335 + 335 Gaps:9 100.00 342 89.77 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial-like
blastp_kegg lcl|sly:543860 1 334 + 334 Gaps:2 100.00 332 86.75 0.0 SCOA succinyl-CoA ligase alpha 1 subunit (EC:6.2.1.5)
blastp_kegg lcl|brp:103850689 1 334 + 334 Gaps:10 99.42 342 83.82 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial-like
blastp_kegg lcl|pda:103706618 1 335 + 335 Gaps:8 100.00 341 89.74 0.0 probable succinyl-CoA ligase [ADP-forming] subunit alpha mitochondrial
blastp_kegg lcl|brp:103855774 1 334 + 334 Gaps:13 99.42 343 83.87 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial
blastp_kegg lcl|mdm:103438297 1 335 + 335 Gaps:1 100.00 334 89.82 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-2 mitochondrial
blastp_kegg lcl|mdm:103455699 1 335 + 335 Gaps:1 100.00 334 89.22 0.0 succinyl-CoA ligase [ADP-forming] subunit alpha-2 mitochondrial-like
blastp_pdb 2scu_D 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 PROTEIN (SUCCINYL-COA LIGASE)
blastp_pdb 2scu_A 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 PROTEIN (SUCCINYL-COA LIGASE)
blastp_pdb 1scu_D 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 SUCCINYL-COA SYNTHETASE ALPHA SUBUNIT
blastp_pdb 1scu_A 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 SUCCINYL-COA SYNTHETASE ALPHA SUBUNIT
blastp_pdb 1jll_D 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 succinyl-CoA synthetase alpha subunit
blastp_pdb 1jll_A 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 succinyl-CoA synthetase alpha subunit
blastp_pdb 1jkj_D 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 succinyl-CoA synthetase alpha subunit
blastp_pdb 1jkj_A 40 329 + 290 Gaps:2 100.00 288 67.71 2e-133 mol:protein length:288 succinyl-CoA synthetase alpha subunit
blastp_pdb 1cqj_D 40 327 + 288 Gaps:2 100.00 286 67.83 2e-132 mol:protein length:286 SUCCINYL-COA SYNTHETASE ALPHA CHAIN
blastp_pdb 1cqj_A 40 327 + 288 Gaps:2 100.00 286 67.83 2e-132 mol:protein length:286 SUCCINYL-COA SYNTHETASE ALPHA CHAIN
blastp_uniprot_sprot sp|Q8GTQ9|SUCA1_SOLLC 1 334 + 334 Gaps:2 100.00 332 86.75 0.0 Succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial OS Solanum lycopersicum GN SCOA PE 1 SV 1
blastp_uniprot_sprot sp|P68209|SUCA1_ARATH 1 334 + 334 Gaps:15 99.42 347 81.74 0.0 Succinyl-CoA ligase [ADP-forming] subunit alpha-1 mitochondrial OS Arabidopsis thaliana GN At5g08300 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LAD2|SUCA2_ARATH 1 334 + 334 Gaps:10 99.71 341 81.76 0.0 Succinyl-CoA ligase [ADP-forming] subunit alpha-2 mitochondrial OS Arabidopsis thaliana GN At5g23250 PE 1 SV 2
blastp_uniprot_sprot sp|Q6DQL1|SUCA2_SOLLC 1 333 + 333 Gaps:9 99.70 337 85.71 0.0 Succinyl-CoA ligase [ADP-forming] subunit alpha-2 mitochondrial OS Solanum lycopersicum PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZL94|SUCA_ORYSJ 14 334 + 321 Gaps:1 97.28 331 87.58 0.0 Probable succinyl-CoA ligase [ADP-forming] subunit alpha mitochondrial OS Oryza sativa subsp. japonica GN Os07g0577700 PE 1 SV 1
blastp_uniprot_sprot sp|Q4ULQ8|SUCD_RICFE 40 330 + 291 Gaps:1 99.32 292 72.41 4e-150 Succinyl-CoA ligase [ADP-forming] subunit alpha OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN sucD PE 3 SV 1
blastp_uniprot_sprot sp|Q1RH56|SUCD_RICBR 40 329 + 290 Gaps:1 99.31 291 72.32 6e-149 Succinyl-CoA ligase [ADP-forming] subunit alpha OS Rickettsia bellii (strain RML369-C) GN sucD PE 3 SV 1
blastp_uniprot_sprot sp|Q9AKE1|SUCD_RICTY 40 330 + 291 Gaps:1 99.32 292 71.03 5e-147 Succinyl-CoA ligase [ADP-forming] subunit alpha OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN sucD PE 3 SV 1
blastp_uniprot_sprot sp|Q92I22|SUCD_RICCN 40 330 + 291 Gaps:1 99.32 292 71.38 2e-146 Succinyl-CoA ligase [ADP-forming] subunit alpha OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN sucD PE 3 SV 1
blastp_uniprot_sprot sp|O08371|SUCD_RICPR 40 330 + 291 Gaps:1 99.32 292 70.69 3e-146 Succinyl-CoA ligase [ADP-forming] subunit alpha OS Rickettsia prowazekii (strain Madrid E) GN sucD PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 41 157 117 G3DSA:3.40.50.720 none none IPR016040
SUPERFAMILY 40 161 122 SSF51735 none none none
Gene3D 158 327 170 G3DSA:3.40.50.261 "KEGG:00020+6.2.1.5","KEGG:00640+6.2.1.5","KEGG:00660+6.2.1.5","KEGG:00720+6.2.1.5","MetaCyc:PWY-5392","MetaCyc:PWY-5537","MetaCyc:PWY-5538","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7384","UniPathway:UPA00223" none IPR016102
ProSitePatterns 276 289 14 PS00399 none ATP-citrate lyase / succinyl-CoA ligases family active site. IPR017440
PANTHER 39 335 297 PTHR11117 none none none
TIGRFAM 42 327 286 TIGR01019 none sucCoAalpha: succinate-CoA ligase, alpha subunit IPR005810
SMART 42 138 97 SM00881 none CoA binding domain IPR003781
Pfam 44 137 94 PF02629 none CoA binding domain IPR003781
PIRSF 38 331 294 PIRSF001553 none none IPR005810
ProSitePatterns 191 220 30 PS01216 none ATP-citrate lyase / succinyl-CoA ligases family signature 1. IPR005810
PRINTS 247 260 14 PR01798 none Succinyl-CoA synthase signature IPR005810
PRINTS 120 137 18 PR01798 none Succinyl-CoA synthase signature IPR005810
PRINTS 216 234 19 PR01798 none Succinyl-CoA synthase signature IPR005810
PRINTS 280 297 18 PR01798 none Succinyl-CoA synthase signature IPR005810
Pfam 190 311 122 PF00549 "KEGG:00020+6.2.1.5","KEGG:00640+6.2.1.5","KEGG:00660+6.2.1.5","KEGG:00720+6.2.1.5","MetaCyc:PWY-5392","MetaCyc:PWY-5537","MetaCyc:PWY-5538","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7384","UniPathway:UPA00223" CoA-ligase IPR005811
SUPERFAMILY 162 325 164 SSF52210 "KEGG:00020+6.2.1.5","KEGG:00640+6.2.1.5","KEGG:00660+6.2.1.5","KEGG:00720+6.2.1.5","MetaCyc:PWY-5392","MetaCyc:PWY-5537","MetaCyc:PWY-5538","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7384","UniPathway:UPA00223" none IPR016102

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 33 32

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting