Protein : Qrob_P0585160.2 Q. robur
Protein Identifier  ? Qrob_P0585160.2 Organism . Name  Quercus robur
Score  82.1 Score Type  egn
Protein Description  (M=1) PTHR10221:SF9 - TAF6-LIKE RNA POLYMERASE II P300/CBP-ASSOCIATED FACTOR-ASSOCIATED FACTOR 65 KDA SUBUNIT 6L (PTHR10221:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 198  
Kegg Orthology  K03131
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0510870 1 164 + 164 none 30.26 542 80.49 2e-89 transcription initiation factor tfiid putative
blastp_kegg lcl|cic:CICLE_v10014827mg 1 158 + 158 none 29.15 542 82.28 2e-89 hypothetical protein
blastp_kegg lcl|cit:102627223 1 158 + 158 none 29.15 542 82.28 2e-89 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|pop:POPTR_0014s15940g 1 164 + 164 none 30.83 532 82.32 3e-89 POPTRDRAFT_246865 TATA box-binding protein-associated factor
blastp_kegg lcl|gmx:100803416 1 164 + 164 none 37.10 442 79.88 5e-89 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|gmx:100783444 1 164 + 164 none 30.15 544 79.27 2e-88 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|vvi:100263756 1 164 + 164 Gaps:1 30.02 543 82.21 3e-88 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|cmo:103491293 1 168 + 168 Gaps:1 31.12 543 78.11 2e-87 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|mus:103983269 1 164 + 164 none 30.54 537 74.39 8e-87 transcription initiation factor TFIID subunit 6-like
blastp_kegg lcl|csv:101206514 1 159 + 159 none 29.28 543 81.76 1e-86 transcription initiation factor TFIID subunit 6-like
blastp_uniprot_sprot sp|Q9MAU3|TAF6_ARATH 1 137 + 137 none 24.95 549 73.72 3e-64 Transcription initiation factor TFIID subunit 6 OS Arabidopsis thaliana GN TAF6 PE 2 SV 1
blastp_uniprot_sprot sp|F4HVA6|TAF6B_ARATH 1 168 + 168 none 31.88 527 58.93 1e-55 Transcription initiation factor TFIID subunit 6b OS Arabidopsis thaliana GN TAF6B PE 1 SV 1
blastp_uniprot_sprot sp|O74462|TAF6_SCHPO 1 110 + 110 Gaps:3 24.12 452 45.87 5e-23 Transcription initiation factor TFIID subunit 6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN taf6 PE 1 SV 1
blastp_uniprot_sprot sp|Q91857|TAF6_XENLA 1 91 + 91 Gaps:1 14.89 618 48.91 3e-22 Transcription initiation factor TFIID subunit 6 OS Xenopus laevis GN taf6 PE 2 SV 3
blastp_uniprot_sprot sp|Q63801|TAF6_RAT 1 92 + 92 Gaps:1 13.72 678 49.46 9e-22 Transcription initiation factor TFIID subunit 6 OS Rattus norvegicus GN Taf6 PE 1 SV 1
blastp_uniprot_sprot sp|Q62311|TAF6_MOUSE 1 92 + 92 Gaps:1 13.72 678 49.46 9e-22 Transcription initiation factor TFIID subunit 6 OS Mus musculus GN Taf6 PE 2 SV 1
blastp_uniprot_sprot sp|P49848|TAF6_HUMAN 1 92 + 92 Gaps:1 13.74 677 49.46 9e-22 Transcription initiation factor TFIID subunit 6 OS Homo sapiens GN TAF6 PE 1 SV 1
blastp_uniprot_sprot sp|P49847|TAF6_DROME 1 141 + 141 Gaps:13 21.45 606 42.31 4e-21 Transcription initiation factor TFIID subunit 6 OS Drosophila melanogaster GN Taf6 PE 1 SV 2
blastp_uniprot_sprot sp|P53040|TAF6_YEAST 1 98 + 98 Gaps:12 20.93 516 37.04 4e-12 Transcription initiation factor TFIID subunit 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TAF6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8R2K4|TAF6L_MOUSE 19 137 + 119 Gaps:4 18.67 616 34.78 2e-09 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS Mus musculus GN Taf6l PE 2 SV 1
rpsblast_cdd gnl|CDD|203686 4 94 + 91 Gaps:1 100.00 92 58.70 2e-33 pfam07571 DUF1546 Protein of unknown function (DUF1546). Associated with pfam02969 in Transcription initiation factor TFIID subunit 6 (TAF6).
rpsblast_cdd gnl|CDD|173968 1 83 + 83 Gaps:1 24.49 343 59.52 7e-31 cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA TFIIB TFIID TFIIE TFIIF and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites core-promoter recognition or a role in essential catalytic activity. These TAFs with the help of specific activators are required only for expression of a subset of genes and are not universally involved for transcription as are GTFs. In yeast and human cells TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and is found in core histones TAFs and many other transcription factors. TFIID has a histone octamer-like substructure. TAF6 is a shared subunit of histone acetyltransferase complex SAGA and TFIID complexes. TAF6 domain interacts with TAF9 and makes a novel histone-like heterodimer that is structurally related to histones H4 and H3. TAF6 may also interact with the downstream core promoter element (DPE).
rpsblast_cdd gnl|CDD|34698 1 126 + 126 Gaps:4 27.56 450 41.94 4e-23 COG5095 TAF6 Transcription initiation factor TFIID subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription].
rpsblast_kog gnl|CDD|37760 1 141 + 141 Gaps:1 24.65 576 48.59 2e-42 KOG2549 KOG2549 KOG2549 Transcription initiation factor TFIID subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 132 132 PTHR10221:SF9 none none none
SUPERFAMILY 11 144 134 SSF48371 none none IPR016024
Gene3D 15 124 110 G3DSA:1.25.10.10 none none IPR011989
PANTHER 1 132 132 PTHR10221 none none none
Pfam 4 93 90 PF07571 none Protein of unknown function (DUF1546) IPR011442

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting