Protein : Qrob_P0584580.2 Q. robur
Protein Identifier  ? Qrob_P0584580.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K07456 - DNA mismatch repair protein MutS2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 918  
Kegg Orthology  K07456
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
GO:0045910 negative regulation of DNA recombination Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029891 28 917 + 890 Gaps:13 95.87 921 69.54 0.0 DNA mismatch repair protein MutS isoform 1
blastp_kegg lcl|pop:POPTR_0004s04200g 1 917 + 917 Gaps:29 100.00 908 68.50 0.0 POPTRDRAFT_1075519 DNA mismatch repair MutS family protein
blastp_kegg lcl|pmum:103324749 4 917 + 914 Gaps:20 97.96 933 68.49 0.0 DNA mismatch repair protein msh2
blastp_kegg lcl|pper:PRUPE_ppa001018mg 4 917 + 914 Gaps:20 97.96 933 68.38 0.0 hypothetical protein
blastp_kegg lcl|gmx:100778373 1 917 + 917 Gaps:21 100.00 914 66.85 0.0 uncharacterized LOC100778373
blastp_kegg lcl|pxb:103944224 1 917 + 917 Gaps:18 98.37 922 68.25 0.0 uncharacterized LOC103944224
blastp_kegg lcl|mdm:103446422 2 917 + 916 Gaps:20 98.26 922 67.99 0.0 uncharacterized LOC103446422
blastp_kegg lcl|rcu:RCOM_0936040 6 916 + 911 Gaps:59 99.66 873 69.08 0.0 DNA mismatch repair protein muts2 putative
blastp_kegg lcl|pvu:PHAVU_002G228200g 37 917 + 881 Gaps:17 96.70 908 67.54 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_084s0016 1 917 + 917 Gaps:26 100.00 913 66.05 0.0 MutS2 family protein
blastp_pdb 3thz_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thy_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thx_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thw_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8f_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8d_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8c_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8b_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8e_A 420 612 + 193 Gaps:5 20.99 934 29.59 1e-19 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 1ng9_B 431 618 + 188 Gaps:6 23.75 800 32.63 3e-19 mol:protein length:800 DNA mismatch repair protein MutS
blastp_uniprot_sprot sp|P73625|MUTS2_SYNY3 39 917 + 879 Gaps:120 99.15 822 36.07 1e-119 Endonuclease MutS2 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|A0PZP4|MUTS2_CLONN 40 910 + 871 Gaps:138 98.47 785 34.80 1e-90 Endonuclease MutS2 OS Clostridium novyi (strain NT) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|B8D298|MUTS2_HALOH 40 917 + 878 Gaps:134 99.87 791 33.29 7e-87 Endonuclease MutS2 OS Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q67QE3|MUTS2_SYMTH 40 901 + 862 Gaps:118 97.60 793 33.72 5e-84 Endonuclease MutS2 OS Symbiobacterium thermophilum (strain T / IAM 14863) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9K8A0|MUTS2_BACHD 44 910 + 867 Gaps:111 98.34 785 32.51 6e-81 Endonuclease MutS2 OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|A5IS30|MUTS2_STAA9 109 917 + 809 Gaps:113 91.82 782 32.31 2e-80 Endonuclease MutS2 OS Staphylococcus aureus (strain JH9) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|A6U0W1|MUTS2_STAA2 109 917 + 809 Gaps:113 91.82 782 32.31 2e-80 Endonuclease MutS2 OS Staphylococcus aureus (strain JH1) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q5WEK0|MUTS2_BACSK 47 910 + 864 Gaps:117 97.97 787 32.43 4e-80 Endonuclease MutS2 OS Bacillus clausii (strain KSM-K16) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|P65496|MUTS2_STAAN 109 917 + 809 Gaps:113 91.82 782 32.17 6e-80 Endonuclease MutS2 OS Staphylococcus aureus (strain N315) GN mutS2 PE 1 SV 1
blastp_uniprot_sprot sp|P65495|MUTS2_STAAM 109 917 + 809 Gaps:113 91.82 782 32.17 6e-80 Endonuclease MutS2 OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN mutS2 PE 1 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 630 651 22 Coil none none none
SMART 430 615 186 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
Pfam 846 916 71 PF01713 none Smr domain IPR002625
Phobius 22 917 896 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 416 618 203 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 109 341 233 SSF48334 none none IPR007696
PANTHER 415 708 294 PTHR11361:SF14 none none IPR005747
PANTHER 62 383 322 PTHR11361:SF14 none none IPR005747
Pfam 418 618 201 PF00488 none MutS domain V IPR000432
SMART 843 917 75 SM00463 none Small MutS-related domain IPR002625
SUPERFAMILY 411 618 208 SSF52540 none none IPR027417
SMART 48 380 333 SM00533 none DNA-binding domain of DNA mismatch repair MUTS family IPR007696
SUPERFAMILY 844 916 73 SSF160443 none none none
Coils 680 701 22 Coil none none none
ProSitePatterns 512 528 17 PS00486 none DNA mismatch repair proteins mutS family signature. IPR000432
PANTHER 415 708 294 PTHR11361 none none none
PANTHER 62 383 322 PTHR11361 none none none
Phobius 14 21 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PIRSF 37 917 881 PIRSF005814 none none IPR005747
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 846 917 72 PS50828 none Smr domain profile. IPR002625

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting