Protein : Qrob_P0584110.2 Q. robur
Protein Identifier  ? Qrob_P0584110.2 Organism . Name  Quercus robur
Score  92.1 Score Type  egn
Protein Description  (M=1) K13171 - serine/arginine repetitive matrix protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1003  
Kegg Orthology  K13171
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_041778 1 1001 + 1001 Gaps:197 99.89 943 52.55 4e-125 Splicing factor PWI domain-containing protein putative isoform 1
blastp_kegg lcl|pvu:PHAVU_011G061700g 1 1002 + 1002 Gaps:123 100.00 924 51.84 7e-125 hypothetical protein
blastp_kegg lcl|pmum:103321983 1 1002 + 1002 Gaps:49 80.21 859 60.81 1e-112 serine/arginine repetitive matrix protein 1
blastp_kegg lcl|mdm:103420478 1 1002 + 1002 Gaps:77 81.20 830 60.98 5e-112 serine/arginine repetitive matrix protein 1
blastp_kegg lcl|pper:PRUPE_ppa001408mg 1 1002 + 1002 Gaps:34 79.43 836 61.75 2e-111 hypothetical protein
blastp_kegg lcl|csv:101225621 1 1000 + 1000 Gaps:268 99.67 899 48.77 8e-107 uncharacterized LOC101225621
blastp_kegg lcl|csv:101206654 1 1000 + 1000 Gaps:268 99.67 899 48.77 8e-107 uncharacterized LOC101206654
blastp_kegg lcl|pxb:103954265 1 1002 + 1002 Gaps:87 80.19 838 61.76 3e-105 serine/arginine repetitive matrix protein 1-like
blastp_kegg lcl|cam:101513414 1 1002 + 1002 Gaps:52 77.36 870 56.91 1e-103 serine/arginine repetitive matrix protein 1-like
blastp_kegg lcl|pop:POPTR_0001s25140g 1 1002 + 1002 Gaps:133 96.37 826 56.66 3e-103 POPTRDRAFT_172546 hypothetical protein
blastp_pdb 1mp1_A 29 133 + 105 Gaps:1 95.50 111 55.66 1e-31 mol:protein length:111 Ser/Arg-related nuclear matrix protein
blastp_uniprot_sprot sp|Q52KI8|SRRM1_MOUSE 1 160 + 160 Gaps:1 17.02 946 53.42 5e-45 Serine/arginine repetitive matrix protein 1 OS Mus musculus GN Srrm1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R5Q2|SRRM1_PONAB 1 160 + 160 Gaps:1 17.56 917 53.42 8e-45 Serine/arginine repetitive matrix protein 1 OS Pongo abelii GN SRRM1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IYB3|SRRM1_HUMAN 1 160 + 160 Gaps:1 17.81 904 53.42 1e-44 Serine/arginine repetitive matrix protein 1 OS Homo sapiens GN SRRM1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9USH5|YJQ5_SCHPO 4 134 + 131 Gaps:13 47.84 301 45.83 9e-39 PWI domain-containing protein C825.05c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC825.05c PE 1 SV 1
rpsblast_cdd gnl|CDD|144903 45 117 + 73 Gaps:1 100.00 74 50.00 7e-26 pfam01480 PWI PWI domain.
rpsblast_cdd gnl|CDD|128606 40 114 + 75 Gaps:3 100.00 74 36.49 2e-17 smart00311 PWI PWI domain in splicing factors.
rpsblast_cdd gnl|CDD|177580 203 478 + 276 Gaps:42 19.30 1352 39.08 7e-12 PHA03307 PHA03307 transcriptional regulator ICP4 Provisional.
rpsblast_cdd gnl|CDD|165506 217 480 + 264 Gaps:120 11.23 3151 34.46 2e-09 PHA03247 PHA03247 large tegument protein UL36 Provisional.
rpsblast_cdd gnl|CDD|173412 706 998 + 293 Gaps:55 25.29 2084 33.59 1e-08 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|152161 273 463 + 191 Gaps:10 11.12 1771 17.77 5e-07 pfam11725 AvrE Pathogenicity factor. This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini a leucine-zipper motif from residues 539-560 and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads erwinias and pantoeas.
rpsblast_kog gnl|CDD|37357 4 356 + 353 Gaps:5 100.00 354 32.20 2e-27 KOG2146 KOG2146 KOG2146 Splicing coactivator SRm160/300 subunit SRm160 (contains PWI domain) [RNA processing and modification General function prediction only].
rpsblast_kog gnl|CDD|36233 620 962 + 343 Gaps:17 22.34 1567 19.14 6e-09 KOG1015 KOG1015 KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily [Transcription].
rpsblast_kog gnl|CDD|35889 143 459 + 317 Gaps:83 33.91 752 42.35 7e-09 KOG0670 KOG0670 KOG0670 U4/U6-associated splicing factor PRP4 [RNA processing and modification].
rpsblast_kog gnl|CDD|36359 671 985 + 315 Gaps:36 30.26 1064 26.09 3e-08 KOG1144 KOG1144 KOG1144 Translation initiation factor 5B (eIF-5B) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|36271 216 449 + 234 Gaps:25 18.52 1258 18.88 2e-07 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35369 203 409 + 207 Gaps:25 30.05 549 47.88 2e-07 KOG0147 KOG0147 KOG0147 Transcriptional coactivator CAPER (RRM superfamily) [Transcription].
rpsblast_kog gnl|CDD|37759 130 429 + 300 Gaps:10 45.64 653 24.16 6e-07 KOG2548 KOG2548 KOG2548 SWAP mRNA splicing regulator [RNA processing and modification].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 40 114 75 SM00311 none PWI, domain in splicing factors IPR002483
SUPERFAMILY 25 133 109 SSF101233 none none IPR002483
PANTHER 2 380 379 PTHR23148 none none none
PANTHER 401 483 83 PTHR23148 none none none
Pfam 45 116 72 PF01480 none PWI domain IPR002483
Gene3D 25 133 109 G3DSA:1.20.1390.10 none none IPR002483
Coils 123 162 40 Coil none none none
ProSiteProfiles 27 125 99 PS51025 none PWI domain profile. IPR002483
Coils 909 950 42 Coil none none none

0 Localization

0 Qtllist

0 Targeting