Protein : Qrob_P0578390.2 Q. robur
Protein Identifier  ? Qrob_P0578390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08495 - golgi SNAP receptor complex member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 269  
Kegg Orthology  K08495
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0005801 cis-Golgi network The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103331727 2 268 + 267 Gaps:29 99.17 240 92.02 2e-155 Golgi SNAP receptor complex member 1-2
blastp_kegg lcl|pxb:103964552 1 268 + 268 Gaps:29 100.00 239 91.63 3e-155 Golgi SNAP receptor complex member 1-2
blastp_kegg lcl|tcc:TCM_005547 1 268 + 268 Gaps:29 100.00 239 91.63 5e-153 Golgi snare 12 isoform 1
blastp_kegg lcl|cic:CICLE_v10021976mg 1 268 + 268 Gaps:29 100.00 239 91.63 5e-153 hypothetical protein
blastp_kegg lcl|fve:101301238 1 268 + 268 Gaps:30 100.00 240 90.83 2e-152 Golgi SNAP receptor complex member 1-2-like
blastp_kegg lcl|mdm:103418404 1 268 + 268 Gaps:31 100.00 237 91.56 3e-152 Golgi SNAP receptor complex member 1-2
blastp_kegg lcl|csv:101227408 1 268 + 268 Gaps:29 99.17 241 87.87 8e-150 Golgi SNAP receptor complex member 1-2-like
blastp_kegg lcl|aly:ARALYDRAFT_903960 1 268 + 268 Gaps:29 100.00 239 88.28 3e-149 hypothetical protein
blastp_kegg lcl|vvi:100265981 1 268 + 268 Gaps:29 100.00 239 89.12 4e-149 Golgi SNARE 12 protein-like
blastp_kegg lcl|crb:CARUB_v10023957mg 1 268 + 268 Gaps:29 100.00 239 87.87 2e-148 hypothetical protein
blastp_uniprot_sprot sp|O22151|GOS12_ARATH 1 268 + 268 Gaps:47 100.00 257 82.10 3e-146 Golgi SNAP receptor complex member 1-2 OS Arabidopsis thaliana GN GOS12 PE 1 SV 2
blastp_uniprot_sprot sp|O88630|GOSR1_MOUSE 13 264 + 252 Gaps:43 95.60 250 36.40 1e-38 Golgi SNAP receptor complex member 1 OS Mus musculus GN Gosr1 PE 1 SV 2
blastp_uniprot_sprot sp|Q2TBU3|GOSR1_BOVIN 13 264 + 252 Gaps:43 95.60 250 36.40 3e-38 Golgi SNAP receptor complex member 1 OS Bos taurus GN GOSR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBL6|GOSR1_PONAB 13 264 + 252 Gaps:41 95.56 248 37.55 1e-37 Golgi SNAP receptor complex member 1 OS Pongo abelii GN GOSR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q62931|GOSR1_RAT 13 264 + 252 Gaps:43 95.60 250 35.98 2e-37 Golgi SNAP receptor complex member 1 OS Rattus norvegicus GN Gosr1 PE 1 SV 1
blastp_uniprot_sprot sp|O08522|GOSR1_CRIGR 13 264 + 252 Gaps:43 95.60 250 35.98 2e-37 Golgi SNAP receptor complex member 1 OS Cricetulus griseus GN GOSR1 PE 1 SV 1
blastp_uniprot_sprot sp|O95249|GOSR1_HUMAN 11 264 + 254 Gaps:43 96.40 250 35.68 4e-37 Golgi SNAP receptor complex member 1 OS Homo sapiens GN GOSR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LMP7|GOS11_ARATH 11 268 + 258 Gaps:41 98.21 223 36.99 2e-31 Golgi SNAP receptor complex member 1-1 OS Arabidopsis thaliana GN GOS11 PE 2 SV 1
blastp_uniprot_sprot sp|Q95ZW1|GOSR1_CAEEL 13 266 + 254 Gaps:38 97.44 234 33.77 1e-26 Golgi SNAP receptor complex member 1 OS Caenorhabditis elegans GN gos-28 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VE50|GOSR1_DROME 11 264 + 254 Gaps:38 97.41 232 38.05 5e-25 Golgi SNAP receptor complex member 1 OS Drosophila melanogaster GN Gos28 PE 2 SV 1
rpsblast_cdd gnl|CDD|152787 193 243 + 51 none 77.27 66 23.53 2e-07 pfam12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus. Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008.
rpsblast_kog gnl|CDD|38418 8 267 + 260 Gaps:30 99.57 231 49.13 3e-69 KOG3208 KOG3208 KOG3208 SNARE protein GS28 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 193 243 51 PF12352 none Snare region anchored in the vesicle membrane C-terminus none
Phobius 1 247 247 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 248 267 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 268 268 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 193 267 75 PTHR21094 none none IPR023601
PANTHER 5 163 159 PTHR21094 none none IPR023601

1 Localization

Analysis Start End Length
TMHMM 248 267 19

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting