Protein : Qrob_P0577370.2 Q. robur
Protein Identifier  ? Qrob_P0577370.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=3) PTHR10231//PTHR10231:SF25 - NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 274  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0005351 sugar:proton symporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO:0008643 carbohydrate transport The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322469 1 266 + 266 none 65.84 404 90.23 9e-173 CMP-sialic acid transporter 2
blastp_kegg lcl|cic:CICLE_v10020426mg 1 266 + 266 none 65.84 404 89.10 1e-172 hypothetical protein
blastp_kegg lcl|cit:102618623 1 266 + 266 none 65.84 404 89.10 1e-172 CMP-sialic acid transporter 3-like
blastp_kegg lcl|pper:PRUPE_ppa006613mg 3 266 + 264 none 65.51 403 90.15 4e-171 hypothetical protein
blastp_kegg lcl|gmx:100791591 1 266 + 266 none 66.00 403 89.10 1e-170 CMP-sialic acid transporter 3-like
blastp_kegg lcl|gmx:100815055 1 266 + 266 none 66.00 403 88.72 1e-169 probable UDP-sugar transporter protein SLC35A4-like
blastp_kegg lcl|pxb:103929919 1 266 + 266 none 65.84 404 88.35 1e-169 CMP-sialic acid transporter 3-like
blastp_kegg lcl|pxb:103953630 1 266 + 266 none 65.84 404 88.35 1e-169 CMP-sialic acid transporter 3-like
blastp_kegg lcl|mdm:103435442 1 266 + 266 none 65.84 404 88.35 1e-169 CMP-sialic acid transporter 3
blastp_kegg lcl|vvi:100855157 1 266 + 266 none 65.68 405 87.22 6e-169 probable UDP-sugar transporter protein SLC35A5-like
blastp_uniprot_sprot sp|Q9C5H6|CSTR3_ARATH 1 266 + 266 none 65.68 405 84.96 4e-164 CMP-sialic acid transporter 3 OS Arabidopsis thaliana GN UTR6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY97|CSTR2_ARATH 1 266 + 266 Gaps:2 66.01 406 83.96 8e-160 CMP-sialic acid transporter 2 OS Arabidopsis thaliana GN At2g43240 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LGE9|CSTR1_ARATH 51 273 + 223 Gaps:7 63.53 340 27.78 7e-21 CMP-sialic acid transporter 1 OS Arabidopsis thaliana GN At5g41760 PE 2 SV 1
blastp_uniprot_sprot sp|A0JMG9|S35A4_DANRE 54 266 + 213 Gaps:11 64.97 314 35.29 2e-19 Probable UDP-sugar transporter protein SLC35A4 OS Danio rerio GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|A4IHW3|S35A4_XENTR 31 262 + 232 Gaps:17 70.72 321 31.28 3e-19 Probable UDP-sugar transporter protein SLC35A4 OS Xenopus tropicalis GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|F4JN00|CSTR4_ARATH 51 260 + 210 Gaps:9 57.10 352 29.85 5e-19 CMP-sialic acid transporter 4 OS Arabidopsis thaliana GN At4g35335 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DCG9|S35A5_XENLA 66 260 + 195 Gaps:43 55.69 413 27.39 1e-14 Probable UDP-sugar transporter protein SLC35A5 OS Xenopus laevis GN slc35a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q90X48|S35A5_DANRE 29 270 + 242 Gaps:61 65.23 440 25.09 1e-12 Probable UDP-sugar transporter protein SLC35A5 OS Danio rerio GN slc35a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R4D7|S35A5_PONAB 61 254 + 194 Gaps:75 56.84 424 24.48 4e-10 Probable UDP-sugar transporter protein SLC35A5 OS Pongo abelii GN SLC35A5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BS91|S35A5_HUMAN 61 254 + 194 Gaps:75 56.84 424 24.90 5e-10 Probable UDP-sugar transporter protein SLC35A5 OS Homo sapiens GN SLC35A5 PE 1 SV 2
rpsblast_cdd gnl|CDD|112934 122 261 + 140 Gaps:7 59.24 238 30.50 4e-15 pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc.
rpsblast_kog gnl|CDD|37445 25 261 + 237 Gaps:8 68.12 345 31.06 3e-39 KOG2234 KOG2234 KOG2234 Predicted UDP-galactose transporter [Carbohydrate transport and metabolism].

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 95 105 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 173 191 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 9 263 255 PTHR10231:SF25 none none none
Phobius 150 166 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 244 264 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 265 273 9 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 20 273 254 PIRSF005799 none none IPR021189
Phobius 192 202 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 39 39 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 63 73 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 131 149 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 40 62 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 224 243 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 9 263 255 PTHR10231 none none IPR007271
SUPERFAMILY 114 193 80 SSF103481 none none none
Phobius 203 223 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 112 261 150 PF04142 none Nucleotide-sugar transporter IPR007271
Phobius 106 130 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 167 172 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 74 94 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 245 264 19
TMHMM 40 62 22
TMHMM 171 188 17
TMHMM 72 94 22
TMHMM 203 225 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting